Browse Element(s) Details


OsAffx.14910.1.S1_at

Description tigr:9633.m02926
TID=OsAffx.14910.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g319503/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31920Os.23697.1.S1_at11/115+18503854..18512299zinc finger protein, putative, expressed
LOC_Os05g31930OsAffx.8166.1.S1_at1/115+18513950..18519323transposon protein, putative, unclassified
LOC_Os05g31940NANA5+18520805..18522969hypothetical protein
LOC_Os05g31950OsAffx.14910.1.S1_at3/115+18529537..18530107hypothetical protein
LOC_Os05g31959Os.6227.2.S1_x_at1/115+18544650..18545383NA
LOC_Os05g31959OsAffx.25517.1.S1_at1/115+18544650..18545383NA
LOC_Os05g31970Os.55930.1.S1_at11/115+18546170..18547026expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14910.1.S1_at--509--111Chr05:18527478..18527502 (25 bp)
ATTCTCCATCATCATAACAGAGGTT
NONE
OsAffx.14910.1.S1_at--851--9591Chr05:18527486..18527510 (25 bp)
TCATCATAACAGAGGTTGTCACATG
NONE
OsAffx.14910.1.S1_at--540--5571Chr05:18527523..18527547 (25 bp)
GAAAGTTACAATGATCACAGAACAA
NONE
OsAffx.14910.1.S1_at--1061--2391NONE
AACAAATAAAGGACACGCACGGGCG
NONE
OsAffx.14910.1.S1_at--715--2171Chr05:18528802..18528826 (25 bp)
ACACGCACGGGCGTCGCGTAGAATA
NONE
OsAffx.14910.1.S1_at--1142--4631Chr05:18528817..18528841 (25 bp)
GCGTAGAATATCAGGGCGTGCAGAA
NONE
OsAffx.14910.1.S1_at--645--4451Chr05:18528858..18528882 (25 bp)
GCCTACTGCCAGATCTCCGGAGTGT
NONE
OsAffx.14910.1.S1_at--122--1291Chr05:18528868..18529137 (25 bp)
AGATCTCCGGAGTGTGCCGAGTTTG
NONE
OsAffx.14910.1.S1_at--608--3271Chr05:18529605..18529629 (25 bp)
CAACAGGACAGGTCGGAAGTGGCAT
LOC_Os05g31950
OsAffx.14910.1.S1_at--517--1671Chr05:18529872..18529896 (25 bp)
AGCCCCCAATGGCTGATCCTGGCAA
LOC_Os05g31950
OsAffx.14910.1.S1_at--839--3531Chr05:18529948..18529972 (25 bp)
CATCCACCTCCACTCTGTTGATGTG
LOC_Os05g31950
Target Sequence 
ATTCTCCATCATCATAACAGAGGTTGTCACATGAAAGAACAGCAAGAAAGTTACAATGATCACAGAACAAATAAAGGACA
CGCACGGGCGTCGCGTAGAATATCAGGGCGTGCAGAAGCTGCTGGTTGCTGCCGCCTACTGCCAGATCTCCGGAGTGTGC
CGAGTTTGCCGGCGGCGCGCGAGACGCGGAGGCGGAGAATGGAGCTAGGTGGCGAGCATGGGGGTGTGGCTGGGTGGCTT
CAGCTGGCGGCGAGCGGCAGCGGGAGCAACAGGACAGGTCGGAAGTGGCATGGAGATGGAGATGGAGGTGGAAGGAAAGG
GGCTACCTCATCTTCCCTGCTGATCTCCCTCCCCTCCCAGCCCCCAATGGCTGATCCTGGCAACACCGCCGTGCACGCCG
ACCTCCCCTTCCACCTCCACCTCCTCCCTTTTTCCATCCACCTCCACTCTGTTGATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis