Browse Element(s) Details


Os.55930.1.S1_at

Description gb:AK109014.1
DB_XREF= gi:32994223
TID=Os.55930.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55930 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-154-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-A02, full insert sequence.
FL= gb:AK109014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3197011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31940NANA5+18520805..18522969hypothetical protein
LOC_Os05g31950OsAffx.14910.1.S1_at3/115+18529537..18530107hypothetical protein
LOC_Os05g31959Os.6227.2.S1_x_at1/115+18544650..18545383NA
LOC_Os05g31959OsAffx.25517.1.S1_at1/115+18544650..18545383NA
LOC_Os05g31970Os.55930.1.S1_at11/115+18546170..18547026expressed protein
LOC_Os05g31979NANA5+18562248..18562525NA
LOC_Os05g31990NANA5+18566967..18568081retrotransposon protein, putative, unclassified
LOC_Os05g32000NANA5+18570469..18572167transposase related protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55930.1.S1_at--278--7891Chr05:18546471..18546495 (25 bp)
GGTTCTCGTGCCAGCAGGCGCTCAC
LOC_Os05g31970
Os.55930.1.S1_at--734--4631Chr05:18546557..18546581 (25 bp)
GCGTCGTCGCCGTTCGAGTACGTGA
LOC_Os05g31970
Os.55930.1.S1_at--917--1931Chr05:18546591..18546615 (25 bp)
ACGGCATGGCGCTCATCAGGGTCCT
LOC_Os05g31970
Os.55930.1.S1_at--501--6071Chr05:18546620..18546644 (25 bp)
GAGTTCATCGAGAGGGCGATCACCT
LOC_Os05g31970
Os.55930.1.S1_at--54--3791Chr05:18546782..18546806 (25 bp)
CTCGAGACGATATCGGAGGCCGAGA
LOC_Os05g31970
Os.55930.1.S1_at--508--4591Chr05:18546848..18546872 (25 bp)
GCGAAGGCGGCGTCAAGATAGCATT
LOC_Os05g31970
Os.55930.1.S1_at--227--7091Chr05:18546859..18546883 (25 bp)
GTCAAGATAGCATTGGCGGCCGCGC
LOC_Os05g31970
Os.55930.1.S1_at--148--8351Chr05:18546873..18546897 (25 bp)
GGCGGCCGCGCCAAAAAAGAGTTCG
LOC_Os05g31970
Os.55930.1.S1_at--317--1351Chr05:18546890..18546914 (25 bp)
AGAGTTCGGATTTGTGCATAGATAC
LOC_Os05g31970
Os.55930.1.S1_at--859--9911Chr05:18546930..18546954 (25 bp)
TACGGATTTGATTTAGTTCTAGCTC
LOC_Os05g31970
Os.55930.1.S1_at--472--6731Chr05:18546945..18546969 (25 bp)
GTTCTAGCTCATTTTGAAGACAGTC
LOC_Os05g31970
Target Sequence 
GGTTCTCGTGCCAGCAGGCGCTCACCGCCGCGTCGCTCGCGTCGCTGTCGCCGTCCCCGGCCGCGAAGGTGTCCCTCGCC
GGCGGCGCGTCGTCGCCGTTCGAGTACGTGACGGGCGACGACGGCATGGCGCTCATCAGGGTCCTCCCGGAGTTCATCGA
GAGGGCGATCACCTGCGTGGCCCGCGTCGCGGGCGGCGGCAAGGCGGGCGGCGAGGCGGCGGCCGACGACCAGCTGTGCA
GCACGCCGGAGCTGAGGAAGCACTACATGCAGCTGGTGGGCGCGCGGCAGCAGCGGCCGTGGTCGCCGGGGCTCGAGACG
ATATCGGAGGCCGAGAAGCGGCGGCGGCGGCGGTCGCCGGTGAGGCTGGTCGCGCTGGCGAAGGCGGCGTCAAGATAGCA
TTGGCGGCCGCGCCAAAAAAGAGTTCGGATTTGTGCATAGATACGGATGGAGACAAGTATACGGATTTGATTTAGTTCTA
GCTCATTTTGAAGACAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis