Browse Element(s) Details


OsAffx.25517.1.S1_at

Description tigr:9639.m03430
TID=OsAffx.25517.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3784011/11hypothetical protein
LOC_Os02g339002/11transposon protein, putative, unclassified
LOC_Os05g319591/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37800OsAffx.31352.1.S1_at11/1111+21883881..21888453Mla1, putative
LOC_Os11g37810NANA11+21892814..21893353hypothetical protein
LOC_Os11g37820NANA11+21895539..21901684retrotransposon protein, putative, unclassified
LOC_Os11g37830NANA11+21902319..21905509retrotransposon protein, putative, unclassified
LOC_Os11g37840OsAffx.25517.1.S1_at11/1111+21912179..21912912hypothetical protein
LOC_Os11g37850OsAffx.32032.2.S1_at11/1111+21917945..21923545NB-ARC domain containing protein, expressed
LOC_Os11g37850OsAffx.32032.5.S1_at3/1111+21917945..21923545NB-ARC domain containing protein, expressed
LOC_Os11g37860Os.52375.1.S1_at11/1111+21926451..21934084NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25517.1.S1_at--554--113Chr11:21912326..21912350 (25 bp)
CTTTGGTACCGACTAGGTATCGACT
LOC_Os11g37840
OsAffx.25517.1.S1_at--346--69912Chr11:21912331..21912355 (25 bp)
GTACCGACTAGGTATCGACTGATAC
LOC_Os11g37840
OsAffx.25517.1.S1_at--88--5711Chr11:21912347..21912371 (25 bp)
GACTGATACATGATACCCGGTGCCA
LOC_Os11g37840
OsAffx.25517.1.S1_at--159--694Chr11:21912356..21912380 (25 bp)
ATGATACCCGGTGCCAAGGTACCGG
LOC_Os11g37840
OsAffx.25517.1.S1_at--853--6971Chr11:21912374..21912398 (25 bp)
GTACCGGGTGGCACCTAGGTATCAG
LOC_Os11g37840
OsAffx.25517.1.S1_at--428--7532Chr11:21912381..21912405 (25 bp)
GTGGCACCTAGGTATCAGCCTGATA
LOC_Os11g37840
OsAffx.25517.1.S1_at--937--4193Chr11:21912515..21912539 (25 bp)
CCCGAGCCAGAGAGCGTGAGAAGTC
LOC_Os11g37840
OsAffx.25517.1.S1_at--925--6156Chr11:21912559..21912583 (25 bp)
GAGGTTGACGGCCATACCTGTTGCA
LOC_Os11g37840
OsAffx.25517.1.S1_at--53--8954Chr11:21912564..21912588 (25 bp)
TGACGGCCATACCTGTTGCAAGTCG
LOC_Os11g37840
OsAffx.25517.1.S1_at--1091--4314Chr11:21912570..21912594 (25 bp)
CCATACCTGTTGCAAGTCGGCGCAG
LOC_Os11g37840
OsAffx.25517.1.S1_at--768--7171Chr11:21912585..21912609 (25 bp)
GTCGGCGCAGGCTGCCAGCGTCCAT
LOC_Os11g37840
Target Sequence 
CTTTGGTACCGACTAGGTATCGACTGATACATGATACCCGGTGCCAAGGTACCGGGTGGCACCTAGGTATCAGCCTGATA
CTTGTGGGGTATCAGAGGGTGCCGTCAAAAAGAGGAGGAGACGTGGGGGAGGGAGGGCCGCAACGGCGGAGGATAGCGTC
GAGGAGGCACGGAGAGTTGAGGGTCGAGGCCCGAGCCAGAGAGCGTGAGAAGTCTCGAGGAGGAGCCGAGGAGGAGGTTG
ACGGCCATACCTGTTGCAAGTCGGCGCAGGCTGCCAGCGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25517.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis