Browse Element(s) Details


Os.52375.1.S1_at

Description gb:AK066717.1
DB_XREF= gi:32976735
TID=Os.52375.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52375 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013082K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013082K15, full insert sequence.
FL= gb:AK066717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3786011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37820NANA11+21895539..21901684retrotransposon protein, putative, unclassified
LOC_Os11g37830NANA11+21902319..21905509retrotransposon protein, putative, unclassified
LOC_Os11g37840OsAffx.25517.1.S1_at11/1111+21912179..21912912hypothetical protein
LOC_Os11g37850OsAffx.32032.2.S1_at11/1111+21917945..21923545NB-ARC domain containing protein, expressed
LOC_Os11g37850OsAffx.32032.5.S1_at3/1111+21917945..21923545NB-ARC domain containing protein, expressed
LOC_Os11g37860Os.52375.1.S1_at11/1111+21926451..21934084NB-ARC domain containing protein, expressed
LOC_Os11g37870OsAffx.31355.1.S1_at11/1111+21940924..21944070NB-ARC domain containing protein, expressed
LOC_Os11g37880OsAffx.31356.1.S1_at11/1111+21950313..21954222NB-ARC domain containing protein
LOC_Os11g37880Os.53927.1.S1_at1/1111+21950313..21954222NB-ARC domain containing protein
LOC_Os11g37890Os.10082.1.S1_at11/1111+21958477..21963357NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52375.1.S1_at--795--5771Chr11:21933342..21933362 (21 bp)
GACGAGGCTTATAATCTGATTCCAT
LOC_Os11g37860
Os.52375.1.S1_at--466--5771Chr11:21933377..21933401 (25 bp)
GACGAGGAGATTTCCGATCCAGGGA
LOC_Os11g37860
Os.52375.1.S1_at--351--6171Chr11:21933473..21933497 (25 bp)
GAGGAGATTTCAGCCACGGACCAGA
LOC_Os11g37860
Os.52375.1.S1_at--1100--8291Chr11:21933640..21933664 (25 bp)
GGCTATCTTGAACCAATTCGCTCTG
LOC_Os11g37860
Os.52375.1.S1_at--86--10691Chr11:21933673..21933778 (25 bp)
TTCCTTGATGCGTGCAGCGGCAGGA
LOC_Os11g37860
Os.52375.1.S1_at--1036--5451Chr11:21933792..21933816 (25 bp)
GAAACTCTTTGGTGGAACCCTCCAT
LOC_Os11g37860
Os.52375.1.S1_at--1144--8171Chr11:21933805..21933829 (25 bp)
GGAACCCTCCATGGCTTTATGACGA
LOC_Os11g37860
Os.52375.1.S1_at--831--1191Chr11:21933841..21933865 (25 bp)
AGTATCCTCCGGCAGACTTGAGCGC
LOC_Os11g37860
Os.52375.1.S1_at--795--2611Chr11:21933874..21933898 (25 bp)
AACCGGCCGTTCGATGGATTGGCTA
LOC_Os11g37860
Os.52375.1.S1_at--970--1191Chr11:21933911..21933935 (25 bp)
AGTTTCCTGTGCCATTTTACTTAGC
LOC_Os11g37860
Os.52375.1.S1_at--881--711Chr11:21934060..21934084 (25 bp)
ATGATCCCATCCAAGTTTTACGGTG
LOC_Os11g37860
Target Sequence 
GACGAGGCTTATAATCTGATTCCATCAGACGATAGCGATGACGAGGAGATTTCCGATCCAGGGAAAGATGACATAAATGA
TGAGGAGGAGGATCAAATTTCAGATCCAGAGGAAACCGACAGAAATTATGGCGAGGAGGAGATTTCAGCCACGGACCAGA
AGCAGGACAATGGCGCAGCCGACGAGGCAAAGAGGAGGAGGCTATCTTGAACCAATTCGCTCTGCACTCTCGTTCCTTGA
TGCGTGCAGCGGCAGGAGGATAATTTCAGAGAAACTCTTTGGTGGAACCCTCCATGGCTTTATGACGAGGAAGAAGACCA
GTATCCTCCGGCAGACTTGAGCGCCAGAACAGAACCGGCCGTTCGATGGATTGGCTAGTTTTTCCTAATAGTTTCCTGTG
CCATTTTACTTAGCTTTTCTACATTGTTTTTATTTACAGATGGATTGTAATATATGCATCAGTGAGGCCTAATCATAGGC
CCAGATAAAAACACAAACTGATGGTGTGTAATTGGTTGGAAGTGCAATGTTTGATGGAATGATCCCATCCAAGTTTTACG
GTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis