Browse Element(s) Details


Os.10082.1.S1_at

Description gb:AK102348.1
DB_XREF= gi:32987557
TID=Os.10082.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10082 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091C16, full insert sequence.
FL= gb:AK102348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3789011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37860Os.52375.1.S1_at11/1111+21926451..21934084NB-ARC domain containing protein, expressed
LOC_Os11g37870OsAffx.31355.1.S1_at11/1111+21940924..21944070NB-ARC domain containing protein, expressed
LOC_Os11g37880OsAffx.31356.1.S1_at11/1111+21950313..21954222NB-ARC domain containing protein
LOC_Os11g37880Os.53927.1.S1_at1/1111+21950313..21954222NB-ARC domain containing protein
LOC_Os11g37890Os.10082.1.S1_at11/1111+21958477..21963357NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os11g37900Os.27713.1.A1_at11/1111+21967023..21970151Beta-ketoacyl-CoA synthase, putative, expressed
LOC_Os11g37910OsAffx.7331.1.S1_at11/1111+21987840..21989290hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0019305biological_processdTDP-rhamnose biosynthesis
GO:0042732biological_processD-xylose metabolism
GO:0000139cellular_componentGolgi membrane
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0008460molecular_functiondTDP-glucose 4,6-dehydratase activity
GO:0047918molecular_functionGDP-mannose 3,5-epimerase activity
GO:0048040molecular_functionUDP-glucuronate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10082.1.S1_at--441--10071Chr11:21958989..21959013 (25 bp)
TAGTGCAGACTCAGGCGCCGGTGCA
LOC_Os11g37890
Os.10082.1.S1_at--576--2311Chr11:21958937..21958961 (25 bp)
AAAGGAGTGAGCTCTCACCCTGGGC
LOC_Os11g37890
Os.10082.1.S1_at--461--5911Chr11:21958929..21958953 (25 bp)
GAGCTCTCACCCTGGGCAGGAAACA
LOC_Os11g37890
Os.10082.1.S1_at--930--3551Chr11:21958902..21958926 (25 bp)
CATCATCATGATATAGTGCTACTGG
LOC_Os11g37890
Os.10082.1.S1_at--15--7331Chr11:21958887..21958911 (25 bp)
GTGCTACTGGTTTCAGAATTTTTCA
LOC_Os11g37890
Os.10082.1.S1_at--29--5231Chr11:21958872..21958896 (25 bp)
GAATTTTTCAGATGCCATATGATGG
LOC_Os11g37890
Os.10082.1.S1_at--672--4411Chr11:21958841..21958865 (25 bp)
GCCACCACCATCTATACAATTTCTT
LOC_Os11g37890
Os.10082.1.S1_at--697--7591Chr11:21958682..21958706 (25 bp)
GGGAAAAACTTCACAAGAACAATGG
LOC_Os11g37890
Os.10082.1.S1_at--184--3151Chr11:21958646..21958670 (25 bp)
AATTCAAGATATATGTGGCCTGAGC
LOC_Os11g37890
Os.10082.1.S1_at--624--271Chr11:21958636..21958660 (25 bp)
ATATGTGGCCTGAGCTGTGTTAAGC
LOC_Os11g37890
Os.10082.1.S1_at--595--4731Chr11:21958623..21958647 (25 bp)
GCTGTGTTAAGCATTCTTAGGCTGT
LOC_Os11g37890
Target Sequence 
TAGTGCAGACTCAGGCGCCGGTGCAGCTTGGCTCCCTCCGTGCTGCTGATGGAAAGGAGTGAGCTCTCACCCTGGGCAGG
AAACAGGCATCATCATGATATAGTGCTACTGGTTTCAGAATTTTTCAGATGCCATATGATGGTTGCCAGCCACCACCATC
TATACAATTTCTTGATTCTGTTTTGGACNTCACTTCCTGAAAGATCAAAGTTTACTAGTCTGCAATTTTCACTTCTTTGT
GTTGTAAACGAGGGTAAACCGCTTTTATATATATACAAGAGGGTGATAATGGTATAGCATTACAGGGGGGAAAAACTTCA
CAAGAACAATGGAATTAAGAATGAATTCAAGATATATGTGGCCTGAGCTGTGTTAAGCATTCTTAGGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis