Browse Element(s) Details


OsAffx.7331.1.S1_at

Description tigr:9639.m03437
TID=OsAffx.7331.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3791011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37890Os.10082.1.S1_at11/1111+21958477..21963357NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os11g37900Os.27713.1.A1_at11/1111+21967023..21970151Beta-ketoacyl-CoA synthase, putative, expressed
LOC_Os11g37910OsAffx.7331.1.S1_at11/1111+21987840..21989290hypothetical protein
LOC_Os11g37920Os.50797.1.S1_at10/1111+21990095..21991509intracellular protease, PfpI family protein, expressed
LOC_Os11g37930NANA11+21992875..21994277hypothetical protein
LOC_Os11g37940OsAffx.7332.1.S1_at10/1111+21997840..21998927Wound-induced protein WIN2 precursor, putative, expressed
LOC_Os11g37944NANA11+21999209..21999871hypothetical protein
LOC_Os11g37950Os.20230.1.S1_at10/1111+22000685..22001753Barwin, putative, expressed
LOC_Os11g37960OsAffx.19224.1.S1_at11/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37960Os.20289.1.S1_at8/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37970Os.8178.1.S1_at11/1111+22010183..22011074win1 precursor, putative, expressed
LOC_Os11g37980Os.57033.1.S1_at11/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37980Os.7393.1.S1_at1/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7331.1.S1_at--667--8391Chr11:21987926..21987950 (25 bp)
GGCCGACGGAGAGCAGAATTGTTAC
LOC_Os11g37910
OsAffx.7331.1.S1_at--960--5191Chr11:21987941..21987965 (25 bp)
GAATTGTTACTCTGCCAACGACGAC
LOC_Os11g37910
OsAffx.7331.1.S1_at--296--5792Chr11:21987960..21987984 (25 bp)
GACGACAAAGCAGACCGAATCCATG
LOC_Os11g37910
OsAffx.7331.1.S1_at--575--2551Chr11:21987993..21988017 (25 bp)
AACTGCTCGTTTGGAGTTACCACTG
LOC_Os11g37910
OsAffx.7331.1.S1_at--1039--10451Chr11:21988009..21988033 (25 bp)
TTACCACTGCACACCATGGGATGTT
LOC_Os11g37910
OsAffx.7331.1.S1_at--343--2112Chr11:21988107..21988131 (25 bp)
ACACGACGCTGGCTGAACACGACGC
LOC_Os11g37910
OsAffx.7331.1.S1_at--95--1531Chr11:21989177..21989196 (20 bp)
AGCATGGCCCAAGCACACATAGTAT
LOC_Os11g37910
OsAffx.7331.1.S1_at--292--10051Chr11:21989191..21989215 (25 bp)
TAGTATGGGCCCTTACACTAATCCT
LOC_Os11g37910
OsAffx.7331.1.S1_at--838--2171Chr11:21989205..21989229 (25 bp)
ACACTAATCCTGGTGAGTTCGACTT
LOC_Os11g37910
OsAffx.7331.1.S1_at--296--6071Chr11:21989219..21989243 (25 bp)
GAGTTCGACTTTGGTCAATCCCTAA
LOC_Os11g37910
OsAffx.7331.1.S1_at--90--7831Chr11:21989231..21989255 (25 bp)
GGTCAATCCCTAATTCCCTATGAAG
LOC_Os11g37910
Target Sequence 
GGCCGACGGAGAGCAGAATTGTTACTCTGCCAACGACGACAAAGCAGACCGAATCCATGGTTTAAAAAACTGCTCGTTTG
GAGTTACCACTGCACACCATGGGATGTTCGAGAACATTCGAGGAGAACTCGAACAAGAAACACATGCGGAGGCATGGCGA
CTTGGAACGAGCCATCGCCCGACACGACGCTGGCTGAACACGACGCACGCACGCGCAAAGCATGGCCCAAGCACACATAG
TATGGGCCCTTACACTAATCCTGGTGAGTTCGACTTTGGTCAATCCCTAATTCCCTATGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis