Browse Element(s) Details


Os.8178.1.S1_at

Description gb:AY050642.1
DB_XREF= gi:16024931
GEN=PR4
TID=Os.8178.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8178 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) dev-stage 1 month-old seedling pathogenesis-related protein (PR4) mRNA, complete cds.
PROD=pathogenesis-related protein
FL= gb:AK121127.1 gb:AY050642.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3797011/11win1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37910OsAffx.7331.1.S1_at11/1111+21987840..21989290hypothetical protein
LOC_Os11g37920Os.50797.1.S1_at10/1111+21990095..21991509intracellular protease, PfpI family protein, expressed
LOC_Os11g37930NANA11+21992875..21994277hypothetical protein
LOC_Os11g37940OsAffx.7332.1.S1_at10/1111+21997840..21998927Wound-induced protein WIN2 precursor, putative, expressed
LOC_Os11g37944NANA11+21999209..21999871hypothetical protein
LOC_Os11g37950Os.20230.1.S1_at10/1111+22000685..22001753Barwin, putative, expressed
LOC_Os11g37960OsAffx.19224.1.S1_at11/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37960Os.20289.1.S1_at8/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37970Os.8178.1.S1_at11/1111+22010183..22011074win1 precursor, putative, expressed
LOC_Os11g37980Os.57033.1.S1_at11/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37980Os.7393.1.S1_at1/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37990OsAffx.31358.1.S1_at11/1111+22022254..22028270CRS1/YhbY domain containing protein, expressed
LOC_Os11g38000Os.25222.1.S2_at11/1111+22032530..22038747NB-ARC domain containing protein, expressed
LOC_Os11g38000Os.25222.1.S1_at11/1111+22032530..22038747NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009615biological_processresponse to virus
GO:0009723biological_processresponse to ethylene stimulus
GO:0008061molecular_functionchitin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8178.1.S1_at--575--391Chr11:22010412..22010436 (25 bp)
ATCACCGGATCTCGAGCACTCATGG
LOC_Os11g37970
Os.8178.1.S1_at--1122--2731Chr11:22010479..22010503 (25 bp)
AAGAAGCATCCAACGTGCGAGCCAC
LOC_Os11g37970
Os.8178.1.S1_at--938--7291Chr11:22010493..22010517 (25 bp)
GTGCGAGCCACGTATCATTATTACA
LOC_Os11g37970
Os.8178.1.S1_at--706--10231Chr11:22010559..22010583 (25 bp)
TATTGTGCCACATGGGATGCCAACA
LOC_Os11g37970
Os.8178.1.S1_at--771--2451Chr11:22010580..22010604 (25 bp)
AACAAACCGTTGTCTTGGCGCCAGA
LOC_Os11g37970
Os.8178.1.S1_at--167--4511Chr11:22010647..22010671 (25 bp)
GCCGAGACTCGTGTGGCAAGTGTAT
LOC_Os11g37970
Os.8178.1.S1_at--1039--7911Chr11:22010825..22010849 (25 bp)
GGTTGGATCTGGACTACGAGACCAT
LOC_Os11g37970
Os.8178.1.S1_at--1007--7191Chr11:22010873..22010897 (25 bp)
GTCGTGGCTACCAGATGGGTCACCT
LOC_Os11g37970
Os.8178.1.S1_at--290--9671Chr11:22010892..22010916 (25 bp)
TCACCTCCAGGTCGATTACAAGTTC
LOC_Os11g37970
Os.8178.1.S1_at--618--6651Chr11:22010924..22010948 (25 bp)
GTTGATTTGGTCATGCCTCTTTGCA
LOC_Os11g37970
Os.8178.1.S1_at--80--6171Chr11:22010999..22011023 (25 bp)
GAGGTTGGCACTCTGTAATCATGCT
LOC_Os11g37970
Target Sequence 
ATCACCGGATCTCGAGCACTCATGGTGGTGGCGCTCCTCTGCGCTGCCGCGGCCATGACTGCTGCACAAGAAGCATCCAA
CGTGCGAGCCACGTATCATTATTACAACCCACAACAGAACAACTGGGACCTGAACAAAGTGAGCGCATATTGTGCCACAT
GGGATGCCAACAAACCGTTGTCTTGGCGCCAGAAGTATGGATGGACCGCCTTCTGTGGACCTGCTGGTCCTAGGGGCCGA
GACTCGTGTGGCAAGTGTATCCAGGTGAAGAACCGGGGAACAGGTGCGACAATAATTGCGAGGATTGTTGACCAATGCAG
CAATGGTGGGTTGGATCTGGACTACGAGACCATCTTCAAGAAGATCGACACAGATGGTCGTGGCTACCAGATGGGTCACC
TCCAGGTCGATTACAAGTTCGTCAATTGTTGATTTGGTCATGCCTCTTTGCATGATCATATACTGGAATAAGAAATATAT
GGTGTTATACAATAAGATGGAAGAGGTTGGCACTCTGTAATCATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8178.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis