Browse Element(s) Details


Os.20230.1.S1_at

Description gb:AK121059.1
DB_XREF= gi:37990682
TID=Os.20230.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023056K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056K07, full insert sequence.
FL= gb:AK121059.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3795010/11Barwin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37910OsAffx.7331.1.S1_at11/1111+21987840..21989290hypothetical protein
LOC_Os11g37920Os.50797.1.S1_at10/1111+21990095..21991509intracellular protease, PfpI family protein, expressed
LOC_Os11g37930NANA11+21992875..21994277hypothetical protein
LOC_Os11g37940OsAffx.7332.1.S1_at10/1111+21997840..21998927Wound-induced protein WIN2 precursor, putative, expressed
LOC_Os11g37944NANA11+21999209..21999871hypothetical protein
LOC_Os11g37950Os.20230.1.S1_at10/1111+22000685..22001753Barwin, putative, expressed
LOC_Os11g37960OsAffx.19224.1.S1_at11/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37960Os.20289.1.S1_at8/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37970Os.8178.1.S1_at11/1111+22010183..22011074win1 precursor, putative, expressed
LOC_Os11g37980Os.57033.1.S1_at11/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37980Os.7393.1.S1_at1/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37990OsAffx.31358.1.S1_at11/1111+22022254..22028270CRS1/YhbY domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009615biological_processresponse to virus
GO:0009723biological_processresponse to ethylene stimulus
GO:0008061molecular_functionchitin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20230.1.S1_at--771--9631Chr11:22001003..22001026 (24 bp)
TCAGGCTGCATGTGGCAAGTGCCTC
LOC_Os11g37950
Os.20230.1.S1_at--813--2851NONE
AAGTGCCTCCTGGTGACGAACACGG
NONE
Os.20230.1.S1_at--225--3211Chr11:22001260..22001284 (25 bp)
CAATGGCGGCCTTGACCTGGACTGG
LOC_Os11g37950
Os.20230.1.S1_at--904--4311Chr11:22001316..22001340 (25 bp)
GCCAGGGCTACCAGAAGGGCCACCT
LOC_Os11g37950
Os.20230.1.S1_at--677--7551Chr11:22001332..22001356 (25 bp)
GGGCCACCTCATCGTCAACTACAAG
LOC_Os11g37950
Os.20230.1.S1_at--319--5731Chr11:22001363..22001387 (25 bp)
GACTGCGGCGACAACTGATTAAGCT
LOC_Os11g37950
Os.20230.1.S1_at--48--3151Chr11:22001407..22001431 (25 bp)
AATTACTCTCCATTATTACATGCTA
LOC_Os11g37950
Os.20230.1.S1_at--23--9891Chr11:22001423..22001447 (25 bp)
TACATGCTAATAAGGTTGCTGCTGC
LOC_Os11g37950
Os.20230.1.S1_at--10--6691Chr11:22001437..22001461 (25 bp)
GTTGCTGCTGCATATACATTATTGT
LOC_Os11g37950
Os.20230.1.S1_at--52--1111Chr11:22001478..22001502 (25 bp)
AGTGGTAAACTCTGCCTGATGAATA
LOC_Os11g37950
Os.20230.1.S1_at--610--6651Chr11:22001533..22001557 (25 bp)
GTTGATCGATCTGCTCAAGATCTTT
LOC_Os11g37950
Target Sequence 
TCAGGCTGCATGTGGCAAGTGCCTCCTGGTGACGAACACGGCGACGGGGGCGCAGATCACGGCGAGGATCGTGGACCAGT
GCGCCAATGGCGGCCTTGACCTGGACTGGGACACCGTCTTCACCAAGATCGACACCGACGGCCAGGGCTACCAGAAGGGC
CACCTCATCGTCAACTACAAGTTCGTCGACTGCGGCGACAACTGATTAAGCTATAGCTNCCTTAGCTAATTAATTACTCT
CCATTATTACATGCTAATAAGGTTGCTGCTGCATATACATTATTGTCGACAGGGCAGAGTAGAGTGGTAAACTCTGCCTG
ATGAATAAATTAAGCAGCTGATAAATAATTGTGATATGTTGATCGATCTGCTCAAGATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis