Browse Element(s) Details


Os.57033.1.S1_at

Description gb:AK110778.1
DB_XREF= gi:32995987
TID=Os.57033.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-B09, full insert sequence.
FL= gb:AK110778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3798011/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37910OsAffx.7331.1.S1_at11/1111+21987840..21989290hypothetical protein
LOC_Os11g37920Os.50797.1.S1_at10/1111+21990095..21991509intracellular protease, PfpI family protein, expressed
LOC_Os11g37930NANA11+21992875..21994277hypothetical protein
LOC_Os11g37940OsAffx.7332.1.S1_at10/1111+21997840..21998927Wound-induced protein WIN2 precursor, putative, expressed
LOC_Os11g37944NANA11+21999209..21999871hypothetical protein
LOC_Os11g37950Os.20230.1.S1_at10/1111+22000685..22001753Barwin, putative, expressed
LOC_Os11g37960OsAffx.19224.1.S1_at11/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37960Os.20289.1.S1_at8/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37970Os.8178.1.S1_at11/1111+22010183..22011074win1 precursor, putative, expressed
LOC_Os11g37980Os.57033.1.S1_at11/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37980Os.7393.1.S1_at1/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37990OsAffx.31358.1.S1_at11/1111+22022254..22028270CRS1/YhbY domain containing protein, expressed
LOC_Os11g38000Os.25222.1.S2_at11/1111+22032530..22038747NB-ARC domain containing protein, expressed
LOC_Os11g38000Os.25222.1.S1_at11/1111+22032530..22038747NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57033.1.S1_at--392--3331Chr11:22013275..22013299 (25 bp)
CACTGGGCCAGATTGTCTTCTACAA
LOC_Os11g37980
Os.57033.1.S1_at--1069--2391Chr11:22013248..22013272 (25 bp)
AAACAGTGCCTCTTGACCACCGGTG
LOC_Os11g37980
Os.57033.1.S1_at--1015--731Chr11:22013221..22013245 (25 bp)
ATGTTCTTGGGCTTGGTCATGACAG
LOC_Os11g37980
Os.57033.1.S1_at--785--651Chr11:22013182..22013206 (25 bp)
ATGCAATTGAGAGGGCCGCCGTGAT
LOC_Os11g37980
Os.57033.1.S1_at--795--4671Chr11:22013149..22013173 (25 bp)
GCGGAAAACTCAAACCCTGGCTGGA
LOC_Os11g37980
Os.57033.1.S1_at--402--8351Chr11:22013131..22013155 (25 bp)
GGCTGGAGATCTCCATTCCCAAGTA
LOC_Os11g37980
Os.57033.1.S1_at--293--8171Chr11:22013095..22013119 (25 bp)
GGAACAATTTCCTTGACTATGACAA
LOC_Os11g37980
Os.57033.1.S1_at--872--10011Chr11:22013023..22013047 (25 bp)
TAGAAGATTCACACAATGGCCCATG
LOC_Os11g37980
Os.57033.1.S1_at--825--851Chr11:22013008..22013032 (25 bp)
ATGGCCCATGAATACACGGTTTTTG
LOC_Os11g37980
Os.57033.1.S1_at--623--4971Chr11:22012931..22012955 (25 bp)
GCATCTTGTTCTATACTCAGTTGTA
LOC_Os11g37980
Os.57033.1.S1_at--887--1191Chr11:22012913..22012937 (25 bp)
AGTTGTACCCGCACATTGTTAGCCA
LOC_Os11g37980
Target Sequence 
CACTGGGCCAGATTGTCTTCTACAATCAAACAGTGCCTCTTGACCACCGGTGGCATGTTCTTGGGCTTGGTCATGACAGA
AGCATAGGAAGAGATGCAATTGAGAGGGCCGCCGTGATCCACTACAGCGGAAAACTCAAACCCTGGCTGGAGATCTCCAT
TCCCAAGTACAGAGATTATTGGAACAATTTCCTTGACTATGACAACCCATACTTGCAGCAGTGCAACATTCACATGTAGA
AGCAGTAGAAGCTAGAAGATTCACACAATGGCCCATGAATACACGGTTTTTGCAATACGTACGTAGTAAGCTAATCTTAT
TCATTCTTTTTGTAGATTTAGCAAGCATCTTGTTCTATACTCAGTTGTACCCGCACATTGTTAGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis