Browse Element(s) Details


Os.25222.1.S2_at

Description gb:AK068168.1
DB_XREF= gi:32978186
TID=Os.25222.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129H24, full insert sequence.
FL= gb:AK067078.1 gb:AK068168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3800011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37970Os.8178.1.S1_at11/1111+22010183..22011074win1 precursor, putative, expressed
LOC_Os11g37980Os.57033.1.S1_at11/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37980Os.7393.1.S1_at1/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37990OsAffx.31358.1.S1_at11/1111+22022254..22028270CRS1/YhbY domain containing protein, expressed
LOC_Os11g38000Os.25222.1.S2_at11/1111+22032530..22038747NB-ARC domain containing protein, expressed
LOC_Os11g38000Os.25222.1.S1_at11/1111+22032530..22038747NB-ARC domain containing protein, expressed
LOC_Os11g38010Os.9681.1.S1_at11/1111+22049000..22053566Targeting protein for Xklp2 containing protein, expressed
LOC_Os11g38020Os.24711.1.A1_at11/1111+22054200..22059727small GTP-binding protein domain containing protein, expressed
LOC_Os11g38030Os.49393.1.S1_at11/1111+22060221..22064020CDK5RAP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25222.1.S2_at--655--3031Chr11:22037332..22037356 (25 bp)
AATCCATCTATTGTTTCACGCGTTC
LOC_Os11g38000
Os.25222.1.S2_at--988--5811Chr11:22037368..22037392 (25 bp)
GACCGCTTCATCATATTTGGCTCAG
LOC_Os11g38000
Os.25222.1.S2_at--496--10231Chr11:22037383..22037407 (25 bp)
TTTGGCTCAGCTGTTCTATGGGAAT
LOC_Os11g38000
Os.25222.1.S2_at--757--2511Chr11:22038334..22038358 (25 bp)
AACTTGCATTACTCAGATCTCTTGA
LOC_Os11g38000
Os.25222.1.S2_at--859--7651Chr11:22038368..22038392 (25 bp)
GGGATAATCCTAGGCATGTCCATGA
LOC_Os11g38000
Os.25222.1.S2_at--342--6171Chr11:22038391..22038415 (25 bp)
GAGGATGTAATTGCCGTAGTCTTAT
LOC_Os11g38000
Os.25222.1.S2_at--510--2451Chr11:22038446..22038470 (25 bp)
AACAAGGGCGGCCTCTTTCCATCAG
LOC_Os11g38000
Os.25222.1.S2_at--1022--10191Chr11:22038461..22038485 (25 bp)
TTTCCATCAGATACCCTAGATCCAT
LOC_Os11g38000
Os.25222.1.S2_at--439--831Chr11:22038491..22038515 (25 bp)
ATGGATTAGTTCCTTCAAGCAGAAT
LOC_Os11g38000
Os.25222.1.S2_at--808--3111Chr11:22038615..22038639 (25 bp)
AATATTCTGTTGTTTTGCATCATAC
LOC_Os11g38000
Os.25222.1.S2_at--793--7071Chr11:22038662..22038686 (25 bp)
GTAATATCTACTCACTCTGGTCAGA
LOC_Os11g38000
Target Sequence 
AATCCATCTATTGTTTCACGCGTTCTTCGACCAANTGACCGCTTCATCATATTTGGCTCAGCTGTTCTATGGGAATATCT
GTCCAATCAGGAAGCTGTTGAGATTGTTAAAAACCATCAAGCTTCTGGAAGTGCCAAAATGCTAGTAAAAGCAGCTCTTC
ATGCAGCAGCCAAAAAGCACAACTTGCATTACTCAGATCTCTTGAAGATGGACAGGGATAATCCTAGGCATGTCCATGAG
GATGTAATTGCCGTAGTCTTATTTATAAACTATGATCAATTACTGAAAGGGAAACAAGGGCGGCCTCTTTCCATCAGATA
CCCTAGATCCATACAACATGGATTAGTTCCTTCAAGCAGAATTAGTTAATGANATGTTTTCATTGAAACAACCTTGAAAA
GAGGACACAACAAAACCTCTNACTATGCTAAATTATCAACACTTTTTGTATTATGATAGATAATATTCTGTTGTTTTGCA
TCATACAAGTAAATGGGAAACTTTGATTGTAATATCTACTCACTCTGGTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25222.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis