Browse Element(s) Details


Os.9681.1.S1_at

Description gb:AK068548.1
DB_XREF= gi:32978565
TID=Os.9681.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155D03, full insert sequence.
FL= gb:AK068548.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3801011/11Targeting protein for Xklp2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37990OsAffx.31358.1.S1_at11/1111+22022254..22028270CRS1/YhbY domain containing protein, expressed
LOC_Os11g38000Os.25222.1.S2_at11/1111+22032530..22038747NB-ARC domain containing protein, expressed
LOC_Os11g38000Os.25222.1.S1_at11/1111+22032530..22038747NB-ARC domain containing protein, expressed
LOC_Os11g38010Os.9681.1.S1_at11/1111+22049000..22053566Targeting protein for Xklp2 containing protein, expressed
LOC_Os11g38020Os.24711.1.A1_at11/1111+22054200..22059727small GTP-binding protein domain containing protein, expressed
LOC_Os11g38030Os.49393.1.S1_at11/1111+22060221..22064020CDK5RAP1, putative, expressed
LOC_Os11g38040NANA11+22064633..22067185expressed protein
LOC_Os11g38050NANA11+22068876..22069856phosphoesterase family protein, putative, expressed
LOC_Os11g38060OsAffx.31359.1.S1_x_at11/1111+22074379..22075359phosphoesterase family protein, putative
LOC_Os11g38070Os.52943.1.S1_at11/1111+22076566..22078090expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9681.1.S1_at--134--2671Chr11:22053035..22053059 (25 bp)
AAGCCGGCAGCCTCCAAGAAGCAGC
LOC_Os11g38010
Os.9681.1.S1_at--748--2691Chr11:22053077..22053101 (25 bp)
AAGCTCTCCGACCAGAGCGCCATGA
LOC_Os11g38010
Os.9681.1.S1_at--889--8971Chr11:22053099..22053123 (25 bp)
TGAACATCGCCGTCCACTAGCTGCT
LOC_Os11g38010
Os.9681.1.S1_at--563--3611Chr11:22053149..22053173 (25 bp)
CTTGGCTGCATGGATCAATCATGGA
LOC_Os11g38010
Os.9681.1.S1_at--620--8031Chr11:22053258..22053282 (25 bp)
GGAGTGATATGATGGGCTTCTGCAA
LOC_Os11g38010
Os.9681.1.S1_at--611--7591Chr11:22053271..22053295 (25 bp)
GGGCTTCTGCAATCTTCAATCATGT
LOC_Os11g38010
Os.9681.1.S1_at--195--1071Chr11:22053340..22053364 (25 bp)
AGGGTTTGTGTGAGACTGCCTGCCA
LOC_Os11g38010
Os.9681.1.S1_at--66--5731Chr11:22053353..22053377 (25 bp)
GACTGCCTGCCATGGGTGAAGTTCA
LOC_Os11g38010
Os.9681.1.S1_at--198--4751Chr11:22053404..22053428 (25 bp)
GCTGATTTTCACTTTGTTTATTTTG
LOC_Os11g38010
Os.9681.1.S1_at--824--8271Chr11:22053442..22053466 (25 bp)
GGCATGTGTCAGTCATAACTTCTTT
LOC_Os11g38010
Os.9681.1.S1_at--875--7391Chr11:22053479..22053503 (25 bp)
GTGATGTGGGTGTTCTTGATGTAAT
LOC_Os11g38010
Target Sequence 
AAGCCGGCAGCCTCCAAGAAGCAGCCCAAGCCACACGCCCACAAGCTCTCCGACCAGAGCGCCATGAACATCGCCGTCCA
CTAGCTGCTTCTCTCTCTGTCTCTCTCTTTCTTGCTTGGCTGCATGGATCAATCATGGAGGAAGGAACCAACCACCCAAT
TCAGGAGGAAAAAGAATCGAGTTCTTGTTTTTTTTCTTCTTCTTCTTCTCTAAGTAATTATTGGGAGTGATATGATGGGC
TTCTGCAATCTTCAATCATGTGGTATTGGTGTAGATAATAAGTTATGATGATGATGATGCACAAGAGGGTTTGTGTGAGA
CTGCCTGCCATGGGTGAAGTTCAGAAGTGATGTTTTATTTTTAATTTATGCTGATTTTCACTTTGTTTATTTTGGGGATG
TGAGAATGGCATGTGTCAGTCATAACTTCTTTTTCTTAATTTATGTGATGTGGGTGTTCTTGATGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis