Browse Element(s) Details


OsAffx.31359.1.S1_x_at

Description tigr:9639.m03452
TID=OsAffx.31359.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3806011/11phosphoesterase family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38010Os.9681.1.S1_at11/1111+22049000..22053566Targeting protein for Xklp2 containing protein, expressed
LOC_Os11g38020Os.24711.1.A1_at11/1111+22054200..22059727small GTP-binding protein domain containing protein, expressed
LOC_Os11g38030Os.49393.1.S1_at11/1111+22060221..22064020CDK5RAP1, putative, expressed
LOC_Os11g38040NANA11+22064633..22067185expressed protein
LOC_Os11g38050NANA11+22068876..22069856phosphoesterase family protein, putative, expressed
LOC_Os11g38060OsAffx.31359.1.S1_x_at11/1111+22074379..22075359phosphoesterase family protein, putative
LOC_Os11g38070Os.52943.1.S1_at11/1111+22076566..22078090expressed protein
LOC_Os11g38080NANA11+22080631..22081224retrotransposon protein, putative, unclassified
LOC_Os11g38090Os.27691.1.S1_x_at1/1111+22085027..22090731retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38100OsAffx.7333.1.S1_at11/1111+22099355..22100803F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009395biological_processphospholipid catabolism
GO:0005886cellular_componentplasma membrane
GO:0004629molecular_functionphospholipase C activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31359.1.S1_x_at--733--1051Chr11:22075109..22075133 (25 bp)
AGGTGTACGGCGACGCCTACACGTG
LOC_Os11g38060
OsAffx.31359.1.S1_x_at--818--4051Chr11:22075040..22075064 (25 bp)
CGATGAGCGGGTTCGCGCAGGAGGC
LOC_Os11g38060
OsAffx.31359.1.S1_x_at--937--1652Chr09:19674699..19674732 (24 bp)
AGCGCGCCGGCATGTCGAGCACGGT
NONE
OsAffx.31359.1.S1_x_at--951--9371Chr11:22074993..22075017 (25 bp)
TCGAGCACGGTGATGAACGGGTTCC
LOC_Os11g38060
OsAffx.31359.1.S1_x_at--3--5051Chr11:22074989..22075013 (25 bp)
GCACGGTGATGAACGGGTTCCGGCC
LOC_Os11g38060
OsAffx.31359.1.S1_x_at--390--1451Chr11:22074962..22074986 (25 bp)
AGAAGGTGCCGGTGTACCGGGAGCT
LOC_Os11g38060
OsAffx.31359.1.S1_x_at--927--5751Chr11:22074892..22074916 (25 bp)
GACGTCGACGCAGCCGAACCGGATG
LOC_Os11g38060
OsAffx.31359.1.S1_x_at--146--5431Chr11:22074877..22074901 (25 bp)
GAACCGGATGTTCGTCCACTCGGCG
LOC_Os11g38060
OsAffx.31359.1.S1_x_at--932--6271Chr11:22074871..22074895 (25 bp)
GATGTTCGTCCACTCGGCGACGTCG
LOC_Os11g38060
OsAffx.31359.1.S1_x_at--285--8431Chr11:22074843..22074867 (25 bp)
GGCCTCGTCAGCAACGACGGCAAGC
LOC_Os11g38060
OsAffx.31359.1.S1_x_at--81--4191Chr11:22074736..22074756 (21 bp)
CCCTCCGTGCTCTTCTACAGGGAAG
LOC_Os11g38060
Target Sequence 
AGGTGTACGGCGACGCCTACACGTGGGGGACCACCTCGCCGGCGACGAAGCCGGGGGTGCCCTCGCCGCCGATGAGCGGG
TTCGCGCAGGAGGCGGAGAAGGAGCGCGCCGGCATGTCGAGCACGGTGATGAACGGGTTCCGGCCGGAGAAGGTGCCGGT
GTACCGGGAGCTGGTGCGGGAGTTCGCCGTGTGCGACCGGTGGTTCGCGTCGGTGCCGACGTCGACGCAGCCGAACCGGA
TGTTCGTCCACTCGGCGACGTCGCACGGCCTCGTCAGCAACGACGGCAAGCAGCTCCGCGCCGGCCTGCCGCAGCGCACC
ATCTTCGACGCCCTCCACGACGCCGGCCACTCCTTCGGCGTCTACTACCAGTTCCCTCCCTCCGTGCTCTTCTACAGGGA
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31359.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis