Browse Element(s) Details


Os.52943.1.S1_at

Description gb:AK070035.1
DB_XREF= gi:32980059
TID=Os.52943.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038E14, full insert sequence.
FL= gb:AK070035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3807011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38010Os.9681.1.S1_at11/1111+22049000..22053566Targeting protein for Xklp2 containing protein, expressed
LOC_Os11g38020Os.24711.1.A1_at11/1111+22054200..22059727small GTP-binding protein domain containing protein, expressed
LOC_Os11g38030Os.49393.1.S1_at11/1111+22060221..22064020CDK5RAP1, putative, expressed
LOC_Os11g38040NANA11+22064633..22067185expressed protein
LOC_Os11g38050NANA11+22068876..22069856phosphoesterase family protein, putative, expressed
LOC_Os11g38060OsAffx.31359.1.S1_x_at11/1111+22074379..22075359phosphoesterase family protein, putative
LOC_Os11g38070Os.52943.1.S1_at11/1111+22076566..22078090expressed protein
LOC_Os11g38080NANA11+22080631..22081224retrotransposon protein, putative, unclassified
LOC_Os11g38090Os.27691.1.S1_x_at1/1111+22085027..22090731retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38100OsAffx.7333.1.S1_at11/1111+22099355..22100803F-box domain containing protein
LOC_Os11g38110NANA11+22101852..22102217retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52943.1.S1_at--108--611Chr11:22077491..22077515 (25 bp)
ATGCGCGTTGGATCTAAGTGGGTCA
LOC_Os11g38070
Os.52943.1.S1_at--512--7831Chr11:22077511..22077535 (25 bp)
GGTCAAGTCCAGTTGCGAGGAACAT
LOC_Os11g38070
Os.52943.1.S1_at--1017--5531Chr11:22077642..22077666 (25 bp)
GAAACTCCTGAATGTTCTTCTGCTG
LOC_Os11g38070
Os.52943.1.S1_at--52--6551Chr11:22077765..22077789 (25 bp)
GATTATGCTCTGTTCCTTGGTTTCA
LOC_Os11g38070
Os.52943.1.S1_at--421--7871Chr11:22077783..22077807 (25 bp)
GGTTTCAATTCTGTGGTGTGCCTTC
LOC_Os11g38070
Os.52943.1.S1_at--692--7491Chr11:22077795..22077819 (25 bp)
GTGGTGTGCCTTCCAACAGAGAATT
LOC_Os11g38070
Os.52943.1.S1_at--521--2631Chr11:22077832..22077856 (25 bp)
AACCTGATTGTGCTTATCTTTCTGA
LOC_Os11g38070
Os.52943.1.S1_at--284--71Chr11:22077925..22077949 (25 bp)
ATTGCAAACTGCAGAGCCTTGGTGA
LOC_Os11g38070
Os.52943.1.S1_at--20--1691Chr11:22077939..22077963 (25 bp)
AGCCTTGGTGATGTGGAGTCTCTTC
LOC_Os11g38070
Os.52943.1.S1_at--563--10871Chr11:22077977..22078001 (25 bp)
TTGGCCATCGCCTATTTGGATAACA
LOC_Os11g38070
Os.52943.1.S1_at--1071--6531Chr11:22078029..22078053 (25 bp)
GATTTTCATGTATTAGGAGCTCCAA
LOC_Os11g38070
Target Sequence 
ATGCGCGTTGGATCTAAGTGGGTCAAGTCCAGTTGCGAGGAACATTGTGAAGAAAAATACACAGTGGGATAATCCTAGCA
AATACATTGTGCTGGCACCATGGGGCGATCTCTTGGAGGTGTGGAGGTTGAGAGACTTTGATGAACCTGATGAAACTCCT
GAATGTTCTTCTGCTGAGTTTGAGGATCGATCTGATAAGTGGTTAACAGAAGAAATTATGCTATATAAAGTTGATATCGA
TAAGCAGAAACTTGTTAAGATAAGCAGCATCGGGGATTATGCTCTGTTCCTTGGTTTCAATTCTGTGGTGTGCCTTCCAA
CAGAGAATTTTCCTATGTTAAAACCTGATTGTGCTTATCTTTCTGATGAATTTTATGAAGAAATATGTGTCAAGAGGCAT
AACTGGCGAGAAATAGGCATTTGGGATTTGAAAAATTGCAAACTGCAGAGCCTTGGTGATGTGGAGTCTCTTCATGCTTG
GCGTAATTGGCCATCGCCTATTTGGATAACACCATCTCTTAGTTAGAAAGATGTGGGAGATTTTCATGTATTAGGAGCTC
CAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis