Browse Element(s) Details


Os.24711.1.A1_at

Description gb:CB644866
DB_XREF= gi:29639857
DB_XREF=OSJNEb06E06.r
CLONE=OSJNEb06E06
TID=Os.24711.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24711 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200604.1 (A.thaliana) GTP binding protein-like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3802011/11small GTP-binding protein domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38000Os.25222.1.S2_at11/1111+22032530..22038747NB-ARC domain containing protein, expressed
LOC_Os11g38000Os.25222.1.S1_at11/1111+22032530..22038747NB-ARC domain containing protein, expressed
LOC_Os11g38010Os.9681.1.S1_at11/1111+22049000..22053566Targeting protein for Xklp2 containing protein, expressed
LOC_Os11g38020Os.24711.1.A1_at11/1111+22054200..22059727small GTP-binding protein domain containing protein, expressed
LOC_Os11g38030Os.49393.1.S1_at11/1111+22060221..22064020CDK5RAP1, putative, expressed
LOC_Os11g38040NANA11+22064633..22067185expressed protein
LOC_Os11g38050NANA11+22068876..22069856phosphoesterase family protein, putative, expressed
LOC_Os11g38060OsAffx.31359.1.S1_x_at11/1111+22074379..22075359phosphoesterase family protein, putative
LOC_Os11g38070Os.52943.1.S1_at11/1111+22076566..22078090expressed protein
LOC_Os11g38080NANA11+22080631..22081224retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24711.1.A1_at--130--271Chr11:22058555..22058579 (25 bp)
ATAGAGTCAATTCCCAAGTTGGTTG
LOC_Os11g38020
Os.24711.1.A1_at--22--6671Chr11:22059033..22059154 (25 bp)
GTTGAAAGACTCATTGGTGCCGATA
LOC_Os11g38020
Os.24711.1.A1_at--81--3611Chr11:22059141..22059165 (25 bp)
CATTGGTGCCGATAGAAGCTTTTGT
LOC_Os11g38020
Os.24711.1.A1_at--698--8051Chr11:22059179..22059203 (25 bp)
GGAGAGCTCCTGAGTGACATACACA
LOC_Os11g38020
Os.24711.1.A1_at--134--6951Chr11:22059379..22059403 (25 bp)
GTACCTTTGTAAAAGCGCATGTGCC
LOC_Os11g38020
Os.24711.1.A1_at--1039--7531Chr11:22059444..22059468 (25 bp)
GTGGCGGCTGTTTCATGATGTGAAC
LOC_Os11g38020
Os.24711.1.A1_at--81--2591Chr11:22059466..22059490 (25 bp)
AACGTCTTGCATATTGCTATCGGCA
LOC_Os11g38020
Os.24711.1.A1_at--629--10271Chr11:22059501..22059525 (25 bp)
TTTGCTAGCCTTTGTAGTTTGTACA
LOC_Os11g38020
Os.24711.1.A1_at--1054--2651Chr11:22059531..22059555 (25 bp)
AAGCCATAGATTTTCATGCCATCAG
LOC_Os11g38020
Os.24711.1.A1_at--890--9611Chr11:22059544..22059568 (25 bp)
TCATGCCATCAGTTTGACCTGTGTA
LOC_Os11g38020
Os.24711.1.A1_at--963--6851Chr11:22059555..22059579 (25 bp)
GTTTGACCTGTGTAGAGCATCATTA
LOC_Os11g38020
Target Sequence 
ATAGAGTCAATTCCCAAGTTGGTTGTATGGAATAAGATTGNCAATACTGATGACACNCTGAGAGTGAAAGAGGAAGCTGA
NAAACAAGGGATAATNTGCATATCAGCCATCAATGGTGATGGTTTGGAGGAGTTNTGCAATGCAATTCAAGCAAAGTTGA
AAGACTCATTGGTGCCGATAGAAGCTTTTGTTCCATATGACAAAGGAGAGCTCCTGAGTGACATACACAAGGTTGGGATG
GTTGAGAAAACGGAGTACACGGAAAATGGTACCTTTGTAAAAGCGCATGTGCCTNTNCCTCTTGCAAGGCTTCTCACGCC
GCTGCGGCAGCAGGTGGCGGCTGTTTCATGATGTGAACGTCTTGCATATTGCTATCGGCAATTCACATANTTTGCTAGCC
TTTGTAGTTTGTACAGAGNTAAGCCATAGATTTTCATGCCATCAGTTTGACCTGTGTAGAGCATCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24711.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis