Browse Element(s) Details


Os.49393.1.S1_at

Description gb:AK066319.1
DB_XREF= gi:32976337
TID=Os.49393.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067A17, full insert sequence.
FL= gb:AK066319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3803011/11CDK5RAP1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38000Os.25222.1.S2_at11/1111+22032530..22038747NB-ARC domain containing protein, expressed
LOC_Os11g38000Os.25222.1.S1_at11/1111+22032530..22038747NB-ARC domain containing protein, expressed
LOC_Os11g38010Os.9681.1.S1_at11/1111+22049000..22053566Targeting protein for Xklp2 containing protein, expressed
LOC_Os11g38020Os.24711.1.A1_at11/1111+22054200..22059727small GTP-binding protein domain containing protein, expressed
LOC_Os11g38030Os.49393.1.S1_at11/1111+22060221..22064020CDK5RAP1, putative, expressed
LOC_Os11g38040NANA11+22064633..22067185expressed protein
LOC_Os11g38050NANA11+22068876..22069856phosphoesterase family protein, putative, expressed
LOC_Os11g38060OsAffx.31359.1.S1_x_at11/1111+22074379..22075359phosphoesterase family protein, putative
LOC_Os11g38070Os.52943.1.S1_at11/1111+22076566..22078090expressed protein
LOC_Os11g38080NANA11+22080631..22081224retrotransposon protein, putative, unclassified
LOC_Os11g38090Os.27691.1.S1_x_at1/1111+22085027..22090731retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49393.1.S1_at--549--8971Chr11:22060791..22060815 (25 bp)
TGAACTGCGCAAGCCAGTGGTTGGT
LOC_Os11g38030
Os.49393.1.S1_at--499--1691Chr11:22060780..22060804 (25 bp)
AGCCAGTGGTTGGTGACTTCATTGA
LOC_Os11g38030
Os.49393.1.S1_at--553--7071Chr11:22060712..22060736 (25 bp)
GTAATCGCGCGCACAAGCTTGAGCA
LOC_Os11g38030
Os.49393.1.S1_at--1023--1491Chr11:22060662..22060686 (25 bp)
AGCACATGCTGTTGCGGCTTAAGGA
LOC_Os11g38030
Os.49393.1.S1_at--762--2551Chr11:22060605..22060629 (25 bp)
AACTGAATCAGATCCCCTTGCCATG
LOC_Os11g38030
Os.49393.1.S1_at--940--3191Chr11:22060544..22060568 (25 bp)
CAATGCAATTTAACTGGTGACTCAG
LOC_Os11g38030
Os.49393.1.S1_at--513--8871Chr11:22060499..22060523 (25 bp)
TGATGTGCTTTTGGCATTTGAAGCC
LOC_Os11g38030
Os.49393.1.S1_at--455--5411Chr11:22060480..22060504 (25 bp)
GAAGCCAAAACAATCACCAGCATTT
LOC_Os11g38030
Os.49393.1.S1_at--459--2531Chr11:22060341..22060365 (25 bp)
AACTCGGCAGCGTGAGGTTTATTTA
LOC_Os11g38030
Os.49393.1.S1_at--683--5271Chr11:22060298..22060322 (25 bp)
GAATGAATGTTGTCCTTGTAAAATA
LOC_Os11g38030
Os.49393.1.S1_at--40--6271Chr11:22060243..22060267 (25 bp)
GATGGGCATCATAGGATTCTCTGTT
LOC_Os11g38030
Target Sequence 
TGAACTGCGCAAGCCAGTGGTTGGTGACTTCATTGAGGTGAAAATCACCAAGTCATNGACAGCNNNNNTNNCCGGGGATG
TAATCGCGCGCACAAGCTTGAGCAANTTNTNCAAGAATCATTCATNTGAAGCACATGCTGTTGCGGCTTAAGGANTANTA
GTTGAGTTTGTAGCANGCCACATNTCAACTGAATCAGATCCCCTTGCCATGATNTNTATCTTGAAATGACTGATAAGTTA
GNCCATACAATGCAATTTAACTGGTGACTCAGTTTTGTGAAGNCAANTAATGTGATGTGCTTTTGGCATTTGAAGCCAAA
ACAATCACCAGCATTTAGTNTGNTAGTCANGNGAAGCAATGCCTNTTNTCTTATGAAGTCTGTATTATCATGTAAAGAGT
TTAAGCANTACTGGCCANCAACANTTNTTTTTNNTTTTGCAAGTTACTNNAACTCGGCAGCGTGAGGTTTATTTATTTAT
TTTTCTTCTTTGGGAATGAATGTTGTCCTTGTAAAATAGAACATTCATTGTAATGTTGCAGATTTTGCGATGGGCATCAT
AGGATTCTCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis