Browse Element(s) Details


OsAffx.19224.1.S1_at

Description tigr:9639.m03442
TID=OsAffx.19224.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to barwin. (barley
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3796011/11Barwin, putative, expressed
LOC_Os01g408301/11hypothetical protein
LOC_Os11g334101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37910OsAffx.7331.1.S1_at11/1111+21987840..21989290hypothetical protein
LOC_Os11g37920Os.50797.1.S1_at10/1111+21990095..21991509intracellular protease, PfpI family protein, expressed
LOC_Os11g37930NANA11+21992875..21994277hypothetical protein
LOC_Os11g37940OsAffx.7332.1.S1_at10/1111+21997840..21998927Wound-induced protein WIN2 precursor, putative, expressed
LOC_Os11g37944NANA11+21999209..21999871hypothetical protein
LOC_Os11g37950Os.20230.1.S1_at10/1111+22000685..22001753Barwin, putative, expressed
LOC_Os11g37960OsAffx.19224.1.S1_at11/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37960Os.20289.1.S1_at8/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37970Os.8178.1.S1_at11/1111+22010183..22011074win1 precursor, putative, expressed
LOC_Os11g37980Os.57033.1.S1_at11/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37980Os.7393.1.S1_at1/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37990OsAffx.31358.1.S1_at11/1111+22022254..22028270CRS1/YhbY domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009615biological_processresponse to virus
GO:0009723biological_processresponse to ethylene stimulus
GO:0008061molecular_functionchitin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19224.1.S1_at--1052--8211Chr11:22005000..22005199 (25 bp)
GGCAAATGTCTCTCGTTTTACGATA
LOC_Os11g37960
OsAffx.19224.1.S1_at--1030--1871Chr11:22005194..22005218 (25 bp)
ACGATATAATCTACTTAGTATCCCC
LOC_Os11g37960
OsAffx.19224.1.S1_at--952--3771Chr11:22005217..22005241 (25 bp)
CCCTCTTACATAACTTACACCGATT
LOC_Os11g37960
OsAffx.19224.1.S1_at--410--9811Chr11:22005232..22005256 (25 bp)
TACACCGATTTTAACTACACGTCGT
LOC_Os11g37960
OsAffx.19224.1.S1_at--396--3731Chr11:22005246..22005270 (25 bp)
CTACACGTCGTTTCTTAAAAGATAT
LOC_Os11g37960
OsAffx.19224.1.S1_at--546--3651Chr11:22005259..22005283 (25 bp)
CTTAAAAGATATTTGCTCTGGTCCA
LOC_Os11g37960
OsAffx.19224.1.S1_at--215--2831Chr11:22005289..22005313 (25 bp)
AAGTATTTCAAGATACCAGTATCTC
LOC_Os11g37960
OsAffx.19224.1.S1_at--619--456Chr11:22005309..22005333 (25 bp)
ATCTCATGGTACCAAGATCCAACGA
LOC_Os11g37960
OsAffx.19224.1.S1_at--201--3516Chr11:22005313..22005337 (25 bp)
CATGGTACCAAGATCCAACGATCGG
LOC_Os11g37960
OsAffx.19224.1.S1_at--1064--23720Chr11:22487201..22487222 (22 bp)
AAACGATTTGGTACCATGAGGTGAC
NONE
OsAffx.19224.1.S1_at--161--7831Chr11:22005347..22005718 (25 bp)
GGTACCATGAGGTGACGAACACGGC
LOC_Os11g37960
Target Sequence 
GGCAAATGTCTCTCGTTTTACGATATAATCTACTTAGTATCCCCCTCTTACATAACTTACACCGATTTTAACTACACGTC
GTTTCTTAAAAGATATTTGCTCTGGTCCAACAAAAAGTATTTCAAGATACCAGTATCTCATGGTACCAAGATCCAACGAT
CGGAAACGATTTGGTACCATGAGGTGACGAACACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis