Browse Element(s) Details


Os.50797.1.S1_at

Description gb:AK058631.1
DB_XREF= gi:32968649
TID=Os.50797.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50797 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C10, full insert sequence.
FL= gb:AK058631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3792010/11intracellular protease, PfpI family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37900Os.27713.1.A1_at11/1111+21967023..21970151Beta-ketoacyl-CoA synthase, putative, expressed
LOC_Os11g37910OsAffx.7331.1.S1_at11/1111+21987840..21989290hypothetical protein
LOC_Os11g37920Os.50797.1.S1_at10/1111+21990095..21991509intracellular protease, PfpI family protein, expressed
LOC_Os11g37930NANA11+21992875..21994277hypothetical protein
LOC_Os11g37940OsAffx.7332.1.S1_at10/1111+21997840..21998927Wound-induced protein WIN2 precursor, putative, expressed
LOC_Os11g37944NANA11+21999209..21999871hypothetical protein
LOC_Os11g37950Os.20230.1.S1_at10/1111+22000685..22001753Barwin, putative, expressed
LOC_Os11g37960OsAffx.19224.1.S1_at11/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37960Os.20289.1.S1_at8/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37970Os.8178.1.S1_at11/1111+22010183..22011074win1 precursor, putative, expressed
LOC_Os11g37980Os.57033.1.S1_at11/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37980Os.7393.1.S1_at1/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50797.1.S1_at--409--911NONE
AGGCGGCGTGCCTGACGAAGCGCAA
NONE
Os.50797.1.S1_at--282--9151Chr11:21990986..21991010 (25 bp)
TGCGTCACGGCGATCTACGACGCCA
LOC_Os11g37920
Os.50797.1.S1_at--63--1831Chr11:21991080..21991104 (25 bp)
ACGCCGACCGGTACGCGTGCGTCGT
LOC_Os11g37920
Os.50797.1.S1_at--251--1631Chr11:21991358..21991382 (25 bp)
AGCTGGCCTGACCTCGCCGAGTTCA
LOC_Os11g37920
Os.50797.1.S1_at--164--6071Chr11:21991376..21991400 (25 bp)
GAGTTCATCGCTCACATCATCAGCC
LOC_Os11g37920
Os.50797.1.S1_at--1078--411Chr11:21991391..21991415 (25 bp)
ATCATCAGCCTCCTTGGCATCACTG
LOC_Os11g37920
Os.50797.1.S1_at--178--8291Chr11:21991406..21991430 (25 bp)
GGCATCACTGTCTCGTTCTGAAGTG
LOC_Os11g37920
Os.50797.1.S1_at--423--7171Chr11:21991415..21991439 (25 bp)
GTCTCGTTCTGAAGTGAAGCAGCAC
LOC_Os11g37920
Os.50797.1.S1_at--178--2731Chr11:21991431..21991455 (25 bp)
AAGCAGCACTGCACTATGCTTCTCT
LOC_Os11g37920
Os.50797.1.S1_at--939--10131Chr11:21991445..21991469 (25 bp)
TATGCTTCTCTGTTCTCTCTGTCAT
LOC_Os11g37920
Os.50797.1.S1_at--975--3771Chr11:21991452..21991476 (25 bp)
CTCTGTTCTCTCTGTCATGAGTAGT
LOC_Os11g37920
Target Sequence 
AGGCGGCGTGCCTGACGAAGCGCAAGGGCGAGGTGTGCGTCACGGCGATCTACGACGCCACCCCGGCGGCGGCGAGCGAC
GAGAGGCGCGGCCACAACTTCGCGGTGACCGCGGACTGGGGCGACGTCGACGCCGACCGGTACGCGTGCGTCGTCGTGCC
GGGCGGCCGCGCGCCGGAGCTTCTGGCGACGCGCGGCGAGGCCGTGGCGCTGGTGCGCGAGTTCGCCGGGAAGGAGAAGG
TGGTCGCCAGCATCGACCAGGGCCACCTCCTCCTCGCCGCGGTGGGGCTCCTCGACGGCAGGAGCTGCGCGAGCGGCGTC
GCGACGAGGGTGGTCGCCGGCCTCGCCGGCGCGGCGAGCGTCCGGCACGGTGGCGCGGTCGCCGACGGGAAGCTCGTGAC
GGCGGCGAGCTGGCCTGACCTCGCCGAGTTCATCGCTCACATCATCAGCCTCCTTGGCATCACTGTCTCGTTCTGAAGTG
AAGCAGCACTGCACTATGCTTCTCTGTTCTCTCTGTCATGAGTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis