Browse Element(s) Details


Os.50283.1.S1_at

Description gb:AK111176.1
DB_XREF= gi:32996385
TID=Os.50283.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-177-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-177-F03, full insert sequence.
FL= gb:AK111176.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3191010/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31860OsAffx.21161.1.S1_at2/115+18463059..18468265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31874OsAffx.27111.1.S1_at11/115+18469227..18474266retrotransposon protein, putative, unclassified
LOC_Os05g31890Os.19001.1.S1_at11/115+18480757..18482380expressed protein
LOC_Os05g31900OsAffx.27112.1.S1_at10/115+18485818..18486687hypothetical protein
LOC_Os05g31910Os.50283.2.S1_at11/115+18492310..18495507ABC transporter family protein, expressed
LOC_Os05g31910Os.50283.1.S1_at10/115+18492310..18495507ABC transporter family protein, expressed
LOC_Os05g31914OsAffx.27113.1.S1_at11/115+18501496..18503220hypothetical protein
LOC_Os05g31920Os.23697.1.S1_at11/115+18503854..18512299zinc finger protein, putative, expressed
LOC_Os05g31930OsAffx.8166.1.S1_at1/115+18513950..18519323transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50283.1.S1_at--1049--3451Chr05:18492846..18492870 (25 bp)
CAGGTCATCATTGTGGTCGAGGTCC
LOC_Os05g31910
Os.50283.1.S1_at--793--3911Chr05:18492817..18492841 (25 bp)
CGGCCATGTGGACCTAGTCGTGCAA
LOC_Os05g31910
Os.50283.1.S1_at--1002--1131Chr05:18492802..18492826 (25 bp)
AGTCGTGCAAGATCTAGGCGTGGTC
LOC_Os05g31910
Os.50283.1.S1_at--424--5071Chr05:18492768..18492792 (25 bp)
GCAGCGGGCAACGTAGCAGACGATA
LOC_Os05g31910
Os.50283.1.S1_at--31--4071Chr05:18492727..18492751 (25 bp)
CGAGGAGCCCTTGCGGCTGGATCCA
LOC_Os05g31910
Os.50283.1.S1_at--1124--3331Chr05:18492597..18492621 (25 bp)
CACGGGCTCAGGTTCATGGTTGGAT
LOC_Os05g31910
Os.50283.1.S1_at--221--831Chr05:18492582..18492606 (25 bp)
ATGGTTGGATCCATCCCAGTCCTAG
LOC_Os05g31910
Os.50283.1.S1_at--149--2351Chr05:18492480..18492504 (25 bp)
AAAGAAGAGCCAATGCCCTCCGATG
LOC_Os05g31910
Os.50283.1.S1_at--439--1551Chr05:18492418..18492442 (25 bp)
AGCTTGCCACTCACTAGAAGGGTGG
LOC_Os05g31910
Os.50283.1.S1_at--290--10592Chr12:9281996..9282406 (25 bp)
TTCTCTCTCTGTTTTCACCAGATAT
NONE
Os.50283.1.S1_at--431--351Chr05:18492310..18492334 (25 bp)
ATAATGCGGCGGGTGTCCAACAACT
NONE
Target Sequence 
CAGGTCATCATTGTGGTCGAGGTCCCGTGCGGCCATGTGGACCTAGTCGTGCAAGATCTAGGCGTGGTCGTTGGGCCAGC
AGCGGGCAACGTAGCAGACGATAGAGGCAGAGATGGGGTCGAGGAGCCCTTGCGGCTGGATCCATCCCAGTCCTAGTCGC
TGTCGCTTTGGCGGCGGGCTAGGCGGGGTCGTCGGGCCAACAGAGTGGCAGCCGCGGGAGGTCGCCCATTGCCGGCCGAG
GAGATGAGGCACGGGCTCAGGTTCATGGTTGGATCCATCCCAGTCCTAGTCGCTGTCGCTTTGGCGGTGGGCTGGGCAAG
GACGATGACGACGGCAACGATGGGATTGGGTTGGAAGAATTTGATAAAAGAAGAGCCAATGCCCTCCGATGACGACAAGA
AGGAGGATTGTGATCAATGGAGTTCCTCAGCTTGCCACTCACTAGAAGGGTGGATTGTGAATTTGTGATGTATGGATAGT
GCCAGATTCTTACTTTTGTTGTTGTTTCTCTCTCTGTTTTCACCAGATATAATAAAATAATGCGGCGGGTGTCCAACAAC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis