Browse Element(s) Details


Os.50283.2.S1_at

Description gb:AK120526.1
DB_XREF= gi:37990149
TID=Os.50283.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50283 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-177-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127B22, full insert sequence.
FL= gb:AK120526.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3191011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31860OsAffx.21161.1.S1_at2/115+18463059..18468265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31874OsAffx.27111.1.S1_at11/115+18469227..18474266retrotransposon protein, putative, unclassified
LOC_Os05g31890Os.19001.1.S1_at11/115+18480757..18482380expressed protein
LOC_Os05g31900OsAffx.27112.1.S1_at10/115+18485818..18486687hypothetical protein
LOC_Os05g31910Os.50283.2.S1_at11/115+18492310..18495507ABC transporter family protein, expressed
LOC_Os05g31910Os.50283.1.S1_at10/115+18492310..18495507ABC transporter family protein, expressed
LOC_Os05g31914OsAffx.27113.1.S1_at11/115+18501496..18503220hypothetical protein
LOC_Os05g31920Os.23697.1.S1_at11/115+18503854..18512299zinc finger protein, putative, expressed
LOC_Os05g31930OsAffx.8166.1.S1_at1/115+18513950..18519323transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50283.2.S1_at--745--7891Chr05:18493469..18493493 (25 bp)
GGTTCTTCGTCTTGTACAGGGTCAT
LOC_Os05g31910
Os.50283.2.S1_at--260--9591Chr05:18493460..18493484 (25 bp)
TCTTGTACAGGGTCATGTGCTGGGC
LOC_Os05g31910
Os.50283.2.S1_at--681--771Chr05:18493446..18493470 (25 bp)
ATGTGCTGGGCTGTGCTGGTCAGGA
LOC_Os05g31910
Os.50283.2.S1_at--195--991Chr05:18493425..18493449 (25 bp)
AGGAGGGCAGCCAAGACCACGCTGT
LOC_Os05g31910
Os.50283.2.S1_at--749--5851Chr05:18493411..18493435 (25 bp)
GACCACGCTGTGATTTTTCACATAA
LOC_Os05g31910
Os.50283.2.S1_at--975--7471Chr05:18493386..18493410 (25 bp)
GTGTGTGTTGTAAGTAGTACTCGTA
LOC_Os05g31910
Os.50283.2.S1_at--671--11Chr05:18493371..18493395 (25 bp)
AGTACTCGTATATGGGAAATGGGAC
LOC_Os05g31910
Os.50283.2.S1_at--1091--2291Chr05:18493355..18493379 (25 bp)
AAATGGGACGTGACTACGCGTCGGA
LOC_Os05g31910
Os.50283.2.S1_at--256--7191Chr05:18493336..18493360 (25 bp)
GTCGGACGTCCGATCCACTAGAGAG
LOC_Os05g31910
Os.50283.2.S1_at--37--5771Chr05:18493332..18493356 (25 bp)
GACGTCCGATCCACTAGAGAGCTGA
LOC_Os05g31910
Os.50283.2.S1_at--203--10031Chr05:18493318..18493342 (25 bp)
TAGAGAGCTGAGATATACTGTTCCT
LOC_Os05g31910
Target Sequence 
GGTTCTTCGTCTTGTACAGGGTCATGTGCTGGGCTGTGCTGGTCAGGAGGGCAGCCAAGACCACGCTGTGATTTTTCACA
TAAGTGTGTGTTGTAAGTAGTACTCGTATATGGGAAATGGGACGTGACTACGCGTCGGACGTCCGATCCACTAGAGAGCT
GAGATATACTGTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50283.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis