Browse Element(s) Details


Os.19001.1.S1_at

Description gb:AK107183.1
DB_XREF= gi:32992392
TID=Os.19001.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H06, full insert sequence.
FL= gb:AK107183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3189011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31850OsAffx.31069.1.S1_x_at2/115+18459146..18462204retrotransposon protein, putative, unclassified
LOC_Os05g31850OsAffx.31069.1.S1_at1/115+18459146..18462204retrotransposon protein, putative, unclassified
LOC_Os05g31860OsAffx.21161.1.S1_at2/115+18463059..18468265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31874OsAffx.27111.1.S1_at11/115+18469227..18474266retrotransposon protein, putative, unclassified
LOC_Os05g31890Os.19001.1.S1_at11/115+18480757..18482380expressed protein
LOC_Os05g31900OsAffx.27112.1.S1_at10/115+18485818..18486687hypothetical protein
LOC_Os05g31910Os.50283.2.S1_at11/115+18492310..18495507ABC transporter family protein, expressed
LOC_Os05g31910Os.50283.1.S1_at10/115+18492310..18495507ABC transporter family protein, expressed
LOC_Os05g31914OsAffx.27113.1.S1_at11/115+18501496..18503220hypothetical protein
LOC_Os05g31920Os.23697.1.S1_at11/115+18503854..18512299zinc finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19001.1.S1_at--529--8931Chr05:18481202..18481226 (25 bp)
TGACCTGTGCTACACGAGCCAGTAC
LOC_Os05g31890
Os.19001.1.S1_at--241--9871Chr05:18481192..18481216 (25 bp)
TACACGAGCCAGTACCTGGCCAAGG
LOC_Os05g31890
Os.19001.1.S1_at--991--9531Chr05:18481098..18481122 (25 bp)
TCTACCAGGACACGGCTACCGGGCT
LOC_Os05g31890
Os.19001.1.S1_at--941--1131Chr05:18481071..18481095 (25 bp)
AGTGCCTGACGATACTGCCGACGGC
LOC_Os05g31890
Os.19001.1.S1_at--178--8751Chr05:18480990..18481014 (25 bp)
TGTACTACGACATCCAGATCCAGGG
LOC_Os05g31890
Os.19001.1.S1_at--429--4711Chr05:18480956..18480980 (25 bp)
GCTGTGGTTCGAGTCGTTCGACCAG
LOC_Os05g31890
Os.19001.1.S1_at--556--4051Chr05:18480858..18480882 (25 bp)
CGATCGCCTGTTCCGTGTGGTCTGT
LOC_Os05g31890
Os.19001.1.S1_at--255--9431Chr05:18480834..18480858 (25 bp)
TCGTGGCGTGCATGTTCGTGTGAAC
LOC_Os05g31890
Os.19001.1.S1_at--421--7331Chr05:18480827..18480851 (25 bp)
GTGCATGTTCGTGTGAACTGCTTGT
LOC_Os05g31890
Os.19001.1.S1_at--165--5471Chr05:18480813..18480837 (25 bp)
GAACTGCTTGTGTTGTGCTACGGAT
LOC_Os05g31890
Os.19001.1.S1_at--780--6631Chr05:18480802..18480826 (25 bp)
GTTGTGCTACGGATGGACTGAGATA
LOC_Os05g31890
Target Sequence 
TGACCTGTGCTACACGAGCCAGTACCTGGCCAAGGCCAAGTTCCCCGCCATGGCGCTCGTGTTCTGGGACGGCGCGGTCA
TGGAGCTGCAGCCGCGGAACTACCTCTACCAGGACACGGCTACCGGGCTGGAGTGCCTGACGATACTGCCGACGGCGGTG
GCCGGCNGGGCTGTCGCTCCTCGGCAGCCTGATCCAGACGGGCACGCACATGATGTACTACGACATCCAGATCCAGGGCC
GCGGGTCGCTGTGGTTCGAGTCGTTCGACCAGCCGTCCAAGTCGTCCAACCGGGCGTCCTCGGCTTCGGCTGCCGCGTTG
CCGCGGATCATCTCGACGGCTGCGGCGATCGCCTGTTCCGTGTGGTCTGTCGTGGCGTGCATGTTCGTGTGAACTGCTTG
TGTTGTGCTACGGATGGACTGAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis