Browse Element(s) Details


Os.18281.1.S1_at

Description gb:AK121835.1
DB_XREF= gi:37991458
TID=Os.18281.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18281 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033100F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033100F12, full insert sequence.
FL= gb:AK121835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3178011/11Adaptor complexes medium subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31740Os.54911.1.S1_at11/115+18406188..18408080Cytochrome P450 family protein, expressed
LOC_Os05g31750Os.22783.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31750Os.38017.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31760Os.8259.1.S1_at11/115+18419551..18421971Annexin family protein, expressed
LOC_Os05g31770Os.13632.1.S1_at11/115+18421530..18424750Tetratricopeptide repeat protein 11, putative, expressed
LOC_Os05g31780Os.18281.1.S1_at11/115+18427306..18431560Adaptor complexes medium subunit family protein, expressed
LOC_Os05g31800NANA5+18443340..18444094hypothetical protein
LOC_Os05g31810NANA5+18444499..18444810hypothetical protein
LOC_Os05g31820NANA5+18451071..18451625hypothetical protein
LOC_Os05g31830OsAffx.4494.1.S1_at11/115+18452306..18453831hypothetical protein
LOC_Os05g31840OsAffx.30713.1.S1_x_at11/115+18454676..18455221hypothetical protein
LOC_Os05g31840OsAffx.30713.1.S1_at11/115+18454676..18455221hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18281.1.S1_at--762--1971Chr05:18427859..18427883 (25 bp)
ACTCCCAATGCTCCTTACAAAGGTT
LOC_Os05g31780
Os.18281.1.S1_at--411--9851Chr05:18427844..18427868 (25 bp)
TACAAAGGTTTTCGAGCCCAGACTC
LOC_Os05g31780
Os.18281.1.S1_at--682--1651Chr05:18427830..18427854 (25 bp)
AGCCCAGACTCAAGCCGGAAGGTAT
LOC_Os05g31780
Os.18281.1.S1_at--329--3151Chr05:18427780..18427804 (25 bp)
AATTCACAGCTGTTGTCTGCACGTC
LOC_Os05g31780
Os.18281.1.S1_at--367--7171Chr05:18427766..18427790 (25 bp)
GTCTGCACGTCGAAACCAACATGAT
LOC_Os05g31780
Os.18281.1.S1_at--107--7491Chr05:18427725..18427749 (25 bp)
GTGGGCTGGCAAGGCATCACGATCA
LOC_Os05g31780
Os.18281.1.S1_at--875--6431Chr05:18427705..18427729 (25 bp)
GATCAGTCAGTTCGTCCATGGGCAG
LOC_Os05g31780
Os.18281.1.S1_at--37--1151Chr05:18427682..18427706 (25 bp)
AGTCTGCTCCCTAGATCAATCTTTC
LOC_Os05g31780
Os.18281.1.S1_at--40--3651Chr05:18427601..18427625 (25 bp)
CTTCGTATAGATGTTCAGTGCCTGA
LOC_Os05g31780
Os.18281.1.S1_at--885--9231Chr05:18427409..18427433 (25 bp)
TCCATGGGCGTCATAGCTGTTGTGT
LOC_Os05g31780
Os.18281.1.S1_at--584--1531Chr05:18427348..18427372 (25 bp)
AGCAGGTGCCTGTAACTCTTATTTA
LOC_Os05g31780
Target Sequence 
ACTCCCAATGCTCCTTACAAAGGTTTTCGAGCCCAGACTCAAGCCGGAAGGTATGAGGTCAGATCTTAAGTTTCTGTGTA
ATTCACAGCTGTTGTCTGCACGTCGAAACCAACATGATACCATAACCCCGGGGGGTGGGCTGGCAAGGCATCACGATCAG
TCAGTTCGTCCATGGGCAGTCTGCTCCCTAGATCAATCTTTCTTCTCCTCGTCGGCAAAGCCACAGAATCTTCGCTGTGT
TTATGAAGGCGAAGATTTCTTCGTATAGATGTTCAGTGCCTGAGATCAAGATTTNGAGTTCTGCCATATCCCNTTCTGTT
CACCATCCATTTCACTGAGTAAATCTGTTAATGTTGAGTATTTCCTTTGAACTACACATTGAAAAGCGGTGGGTGTTTTT
GAAGTGAATAGGTTTTGAACCCCCAACTCCNNTCAACAACCAGGGNNATNATTTCCATGGGCGTCATAGCTGTTGTGTTT
GCATTTGTAATTTGTAAACAGCTGTACAAAAATTAGCAGGTGCCTGTAACTCTTATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis