Browse Element(s) Details


Os.38017.1.S1_s_at

Description gb:AU031467
DB_XREF= gi:3767357
DB_XREF=AU031467
CLONE=E61640_1A
TID=Os.38017.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38017 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_181409.1 (A.thaliana) putative annexin (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3175011/11Annexin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31720Os.50440.1.S1_at10/115+18385822..18389490zinc finger and C2 domain protein, putative, expressed
LOC_Os05g31730OsAffx.4492.1.S1_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31730OsAffx.4492.1.S1_x_at11/115+18394382..18398339Sodium/hydrogen exchanger family protein, expressed
LOC_Os05g31740Os.54911.1.S1_at11/115+18406188..18408080Cytochrome P450 family protein, expressed
LOC_Os05g31750Os.22783.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31750Os.38017.1.S1_s_at11/115+18413191..18414870Annexin family protein, expressed
LOC_Os05g31760Os.8259.1.S1_at11/115+18419551..18421971Annexin family protein, expressed
LOC_Os05g31770Os.13632.1.S1_at11/115+18421530..18424750Tetratricopeptide repeat protein 11, putative, expressed
LOC_Os05g31780Os.18281.1.S1_at11/115+18427306..18431560Adaptor complexes medium subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0015774biological_processpolysaccharide transport
GO:0009928cellular_componentcell surface (sensu Magnoliophyta)
GO:0005509molecular_functioncalcium ion binding
GO:0005544molecular_functioncalcium-dependent phospholipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38017.1.S1_s_at--562--4831Chr05:18414837..18414861 (25 bp)
GCTCACAGCAATCAGCTAAGCCAGT
LOC_Os05g31750
Os.38017.1.S1_s_at--888--9791Chr05:18414821..18414845 (25 bp)
TAAGCCAGTAGCCAATCCTCACTCA
LOC_Os05g31750
Os.38017.1.S1_s_at--635--3651Chr05:18414788..18414812 (25 bp)
CTTCTCTTCCCATCTTTGTTGCTTG
LOC_Os05g31750
Os.38017.1.S1_s_at--280--10271Chr05:18414774..18414798 (25 bp)
TTTGTTGCTTGCATTCAGAGATCAT
LOC_Os05g31750
Os.38017.1.S1_s_at--413--3431Chr05:18414759..18414783 (25 bp)
CAGAGATCATCCAATCGGCCATGGC
LOC_Os05g31750
Os.38017.1.S1_s_at--37--591Chr05:18414727..18414751 (25 bp)
ATCCAGCATCTGACCAGGGCCTTCT
LOC_Os05g31750
Os.38017.1.S1_s_at--849--1671Chr05:18414591..18414739 (25 bp)
ACCAGGGCCTTCTCAGGGCTCGGTG
LOC_Os05g31750
Os.38017.1.S1_s_at--178--2651Chr05:18414504..18414528 (25 bp)
AAGCTGTCCGGGTTCAGGAAGAGCT
LOC_Os05g31750
Os.38017.1.S1_s_at--839--9631Chr05:18414491..18414515 (25 bp)
TCAGGAAGAGCTTCAATGGCTTCTT
LOC_Os05g31750
Os.38017.1.S1_s_at--796--3651Chr05:18414472..18414496 (25 bp)
CTTCTTCAAGGATCATGGCGGCGTC
LOC_Os05g31750
Os.38017.1.S1_s_at--340--6071Chr05:18414301..18414429 (25 bp)
GAGTTCTCGCGGTTCAAGAACCTGA
LOC_Os05g31750
Target Sequence 
GCTCACAGCAATCAGCTAAGCCAGTAGCCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTTTGTTGCTTGCATTCA
GAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACCAGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGA
CGAGCCGGCGATGGTGTCGGCGCTGGCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATG
GCTTCTTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATGGCTCCACCTCGCCGCCGAGTTCTCGCG
GTTCAAGAACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38017.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis