Browse Element(s) Details

Os.40000.1.S1_x_at

Description

gb:CR279062
DB_XREF= gi:44665628
DB_XREF=CR279062
CLONE=y693d01p5
TID=Os.40000.1
CNT=17
FEA=mRNA
TIER=ConsEnd
STK=4
UG=Os.40000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutathione S-transferase (OSJNBb0038A07.30), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g38600	11/11	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38610	3/11	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38590	1/11	glutathione S-transferase GSTU6, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g38540	Os.7174.1.S1_at	11/11	10	+	20245154..20246432	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38540	Os.46634.1.S1_x_at	1/11	10	+	20245154..20246432	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38540	Os.46635.1.S1_x_at	1/11	10	+	20245154..20246432	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38550	NA	NA	10	+	20250679..20251251	transposon protein, putative, unclassified
LOC_Os10g38560	NA	NA	10	+	20252697..20254109	retrotransposon protein, putative, unclassified
LOC_Os10g38570	NA	NA	10	+	20257542..20258111	transposon protein, putative, unclassified
LOC_Os10g38580	Os.5053.1.S1_at	11/11	10	+	20260075..20261169	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38590	Os.15699.1.S1_at	8/11	10	+	20262829..20263917	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38590	Os.40000.1.S1_x_at	1/11	10	+	20262829..20263917	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38600	Os.40000.1.S1_at	11/11	10	+	20265385..20266432	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38600	Os.40000.1.S1_x_at	11/11	10	+	20265385..20266432	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38610	Os.8868.1.S1_at	11/11	10	+	20267390..20268697	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38610	Os.40000.1.S1_x_at	3/11	10	+	20267390..20268697	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630	Os.7732.1.S1_at	10/11	10	+	20270215..20272232	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630	OsAffx.5632.1.S1_x_at	2/11	10	+	20270215..20272232	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38630	OsAffx.5632.1.S1_at	2/11	10	+	20270215..20272232	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38640	NA	NA	10	+	20274076..20274906	glutathione S-transferase GSTU6, putative
LOC_Os10g38660	NA	NA	10	+	20277801..20278597	glutathione S-transferase GSTU6, putative
LOC_Os10g38664	NA	NA	10	+	20279232..20279933	expressed protein
LOC_Os10g38670	Os.21842.1.S1_at	11/11	10	+	20280396..20281652	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38680	OsAffx.27523.1.S1_x_at	11/11	10	+	20282048..20283534	hypothetical protein
LOC_Os10g38680	OsAffx.27523.3.S1_x_at	1/11	10	+	20282048..20283534	hypothetical protein
LOC_Os10g38690	OsAffx.18569.1.S1_x_at	11/11	10	+	20287129..20287900	glutathione S-transferase GSTU6, putative
LOC_Os10g38690	OsAffx.18569.1.S1_at	11/11	10	+	20287129..20287900	glutathione S-transferase GSTU6, putative
LOC_Os10g38690	OsAffx.22609.1.S1_x_at	1/11	10	+	20287129..20287900	glutathione S-transferase GSTU6, putative
LOC_Os10g38700	Os.14444.1.S1_at	11/11	10	+	20289681..20290839	glutathione S-transferase GSTU6, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009407	biological_process	toxin catabolism
GO:0005737	cellular_component	cytoplasm
GO:0004364	molecular_function	glutathione transferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.40000.1.S1_x_at--212--421	1	Chr10:20265734..20265872 (25 bp)	CCGCCTATATCGAAGACAAGCTGGT	LOC_Os10g38600
Os.40000.1.S1_x_at--268--73	1	Chr10:20265937..20265961 (25 bp)	ATGTTCGTCGCGGTGGAAGCTCTCG	LOC_Os10g38600
Os.40000.1.S1_x_at--147--289	3	Chr10:20268047..20268071 (25 bp)	AAGGGATGCTTCTTCGGCGGCGACA	LOC_Os10g38610
Os.40000.1.S1_x_at--239--645	2	Chr10:20268133..20268157 (25 bp)	GATCACCGGTGGAAAGCTCTTCGAC	LOC_Os10g38610
Os.40000.1.S1_x_at--399--731	2	Chr10:20266207..20266231 (25 bp)	GTGCTGTACGCACGGAATGCCGCCA	LOC_Os10g38600
Os.40000.1.S1_x_at--5--373	1	Chr10:20266232..20266256 (25 bp)	CTACCGCCGCAAACAACTGAATTTA	LOC_Os10g38600
Os.40000.1.S1_x_at--180--1035	1	Chr10:20266253..20266277 (25 bp)	TTTACTCAGCTTAAGCAGGCGTCGC	LOC_Os10g38600
Os.40000.1.S1_x_at--509--1049	1	Chr10:20266263..20266287 (25 bp)	TTAAGCAGGCGTCGCGACGTGTCTC	LOC_Os10g38600
Os.40000.1.S1_x_at--517--383	1	Chr10:20266302..20266326 (25 bp)	CTGCGTGCCTTGCTCGGACAAATGT	LOC_Os10g38600
Os.40000.1.S1_x_at--998--15	1	Chr10:20266359..20266383 (25 bp)	ATTTTCACTCGCTGTGGTCGTTATC	LOC_Os10g38600
Os.40000.1.S1_x_at--9--415	1	Chr10:20266368..20266392 (25 bp)	CGCTGTGGTCGTTATCTGTTGATTG	LOC_Os10g38600

Target Sequence

CCGCCTATATCGAAGACAAGCTGGTGGCGCCATGGGAGAANGGTGTTCAGGGCCAAGACGGAGGAGGAGAGGGCCGCGTG
GATGAAGCAGATGTTCGTCGCGGTGGAAGCTCTCGAGGGAGGCCTGAAGGAGTGCTCCANGGGGAAGGGATGCTTCTTCG
GCGGCGACAGCGTCGGCTACGTCGACGTCGTGCTGGGGGGTGGCGTCTCCTTCGTGCACGCCAACGACGTGATCACCGGT
GGAAAGCTCTTCGACGCGGCGAAGACGCCGCTGCTGGCGGAGTGGTTGGGGCGCTTCGGCGAGCTCGACGCCGCCAAGGC
GGTGCTGCAGGACGTCGACAGGGCAGTGGAGTACACCAAGGTGCTGTACGCACGGAATGCCGCCACTACCGCCGCAAACA
ACTGAATTTACTCAGCTTAAGCAGGCGTCGCGACGTGTCTCGGGCTCTCGGCTGGCTGCGTGCCTTGCTCGGACAAATGT
ACGGAGGACAGCTGTGGATTAGATTGTTCAGTATTTTCACTCGCTGTGGTCGTTATCTGTTGATTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis