Browse Element(s) Details


Os.46875.1.S1_at

Description gb:AK106313.1
DB_XREF= gi:32991522
TID=Os.46875.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0053C23.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-D07, full insert sequence.
FL= gb:AK106313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3883411/11no apical meristem, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38780Os.9101.1.S1_at11/1110+20316247..20317266glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38790OsAffx.18571.1.S1_at10/1110+20317401..20318318hypothetical protein
LOC_Os10g38800OsAffx.30714.1.S1_x_at11/1110+20322783..20325191Leucine Rich Repeat family protein, expressed
LOC_Os10g38820Os.46836.1.S1_at9/1110+20331077..20333627bZIP transcription factor family protein, expressed
LOC_Os10g38834Os.46875.1.S1_at11/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38834Os.52782.1.S1_at1/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38850OsAffx.30715.2.S1_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38850OsAffx.30715.2.S1_s_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38850Os.52167.1.S1_x_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38860Os.46858.1.S1_at11/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_x_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38870Os.34841.1.S1_at11/1110+20372404..20373841heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46875.1.S1_at--88--8071Chr10:20347979..20348003 (25 bp)
GGAGCTAACGCCTTCCTGCGGTACT
LOC_Os10g38834
Os.46875.1.S1_at--46--6471Chr10:20348096..20348120 (25 bp)
GATAACGCCGATTCTAGCAGGCGCC
LOC_Os10g38834
Os.46875.1.S1_at--905--6171Chr10:20348204..20348228 (25 bp)
GAGGAGCAGCACACCTGCCGGGCCA
LOC_Os10g38834
Os.46875.1.S1_at--1068--4651Chr10:20348370..20348394 (25 bp)
GCGTGCCTGGCGACATCAACTGATT
LOC_Os10g38834
Os.46875.1.S1_at--705--9711Chr10:20348385..20348409 (25 bp)
TCAACTGATTCAGGGCCAAGCCGAT
LOC_Os10g38834
Os.46875.1.S1_at--429--8451Chr10:20348398..20348422 (25 bp)
GGCCAAGCCGATCGAGCTCTCACTT
LOC_Os10g38834
Os.46875.1.S1_at--692--4811Chr10:20348413..20348437 (25 bp)
GCTCTCACTTCTCCTTAGCATAAAG
LOC_Os10g38834
Os.46875.1.S1_at--707--6231Chr10:20348462..20348486 (25 bp)
GATGGCTATATATACGTACGCCTAT
LOC_Os10g38834
Os.46875.1.S1_at--501--6991Chr10:20348477..20348501 (25 bp)
GTACGCCTATACATATGTAGCTGGT
LOC_Os10g38834
Os.46875.1.S1_at--72--3911Chr10:20348497..20348521 (25 bp)
CTGGTCAAAGCATCGTTTCAGTTTC
LOC_Os10g38834
Os.46875.1.S1_at--380--6831Chr10:20348523..20348547 (25 bp)
GTTTCAGTTCTTGGAAGTCAATGGA
LOC_Os10g38834
Target Sequence 
GGAGCTAACGCCTTCCTGCGGTACTCCACCCGCCTGGCCGAGCTCCCGCAGCTGGAGAGCCCGCCGCTGCCAAGCCAGGG
GAGCCAGGCGGCCTCGGCCGTCGTCGACGGCGAGGAAGATAACGCCGATTCTAGCAGGCGCCCTGGCGGCGGCGGCGGCG
CCGCCGCCGCGGTGACCACGGACTGGAGGGCGTTCGACAAGTTCGTCGCGTCCCAGCTCAGCCCCGAGGAGCAGCACACC
TGCCGGGCCACCGACGACGACGACATGGCAGCGCTGCTGCTCCTCGACGGCGGCGGGCAGGAGGACGACGCCGGGAGGTG
GCTGGGCTCCGCCGGGTTGCTGAGCGCCGTGGCGGCCGACGCGACGACGGACTGCGGCCTCGGCACCAGCTGCGTGCCTG
GCGACATCAACTGATTCAGGGCCAAGCCGATCGAGCTCTCACTTCTCCTTAGCATAAAGTGTGAGATATCTACGAATTGT
ATGGATGGCTATATATACGTACGCCTATACATATGTAGCTGGTCAAAGCATCGTTTCAGTTTCAGTTTCAGTTCTTGGAA
GTCAATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis