Browse Element(s) Details


Os.34841.1.S1_at

Description gb:AK069934.1
DB_XREF= gi:32979958
TID=Os.34841.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.34841 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0053C23.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035E16, full insert sequence.
FL= gb:AK069934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3887011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38834Os.46875.1.S1_at11/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38834Os.52782.1.S1_at1/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38850OsAffx.30715.2.S1_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38850OsAffx.30715.2.S1_s_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38850Os.52167.1.S1_x_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38860Os.46858.1.S1_at11/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_x_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38870Os.34841.1.S1_at11/1110+20372404..20373841heavy metal-associated domain containing protein, expressed
LOC_Os10g38880Os.8508.1.S1_at11/1110+20384821..20385928uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os10g38890Os.46523.1.S1_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.3.S1_x_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.2.S1_at10/1110+20389487..20393177expressed protein
LOC_Os10g38900Os.11300.1.S2_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38900Os.11300.1.S1_at11/1110+20395367..20401316angustifolia, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046916biological_processtransition metal ion homeostasis
GO:0046872molecular_functionmetal ion binding
GO:0046914molecular_functiontransition metal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34841.1.S1_at--254--1711Chr10:20372794..20372818 (25 bp)
ACCACACTACGTCGTGCAGAGCATG
LOC_Os10g38870
Os.34841.1.S1_at--454--471Chr10:20372745..20372769 (25 bp)
ATCTGCTGAACTCGATCGATGCCGC
LOC_Os10g38870
Os.34841.1.S1_at--388--9171Chr10:20372726..20372750 (25 bp)
TGCCGCCATGGCTAGAGGTAGTAGC
LOC_Os10g38870
Os.34841.1.S1_at--734--1951Chr10:20372676..20372700 (25 bp)
ACTGTATACGTCTACGTGTACGCAC
LOC_Os10g38870
Os.34841.1.S1_at--85--7451Chr10:20372661..20372685 (25 bp)
GTGTACGCACGAGTTACGACGCAAA
LOC_Os10g38870
Os.34841.1.S1_at--826--6771Chr10:20372649..20372673 (25 bp)
GTTACGACGCAAATCACTATGCATG
LOC_Os10g38870
Os.34841.1.S1_at--871--8751Chr10:20372512..20372536 (25 bp)
TGTATGCACCATATGTCTGTATATA
LOC_Os10g38870
Os.34841.1.S1_at--200--2011Chr10:20372485..20372509 (25 bp)
ACTCTCCGTATAGTACGTGTCAACA
LOC_Os10g38870
Os.34841.1.S1_at--156--9931Chr10:20372472..20372496 (25 bp)
TACGTGTCAACAGGCAGGAAATCTT
LOC_Os10g38870
Os.34841.1.S1_at--934--6491Chr10:20372447..20372471 (25 bp)
GATAGTTTGGAACTTTGTCATCCAA
LOC_Os10g38870
Os.34841.1.S1_at--1067--8731Chr10:20372411..20372435 (25 bp)
TGTAATCATCTATAGCTGCAGTTTT
LOC_Os10g38870
Target Sequence 
ACCACACTACGTCGTGCAGAGCATGGAGGAAAACCCCAACTCCTGCGCCATCTGCTGAACTCGATCGATGCCGCCATGGC
TAGAGGTAGTAGCCGAGTACGTACACAGCATGTGTAGTACTGTATACGTCTACGTGTACGCACGAGTTACGACGCAAATC
ACTATGCATGAATGCAAGCATGCTAGCTACTACATGTCCAGTTACATGGTTAAAAGTTGTTATATNTTACTACCGAGGTA
GTAACTAGTTCTAATGCTGTAATTTTNGTNATAAGGAAGATATGTATGCACCATATGTCTGTATATACNACTCTCCGTAT
AGTACGTGTCAACAGGCAGGAAATCTTGATAGTTTGGAACTTTGTCATCCAAGAAAATCATAATGTAATCATCTATAGCT
GCAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis