Browse Element(s) Details


Os.46523.1.S1_at

Description gb:AK068817.1
DB_XREF= gi:32978842
TID=Os.46523.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46523 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0053C23.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162E10, full insert sequence.
FL= gb:AK068817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3889011/11expressed protein
LOC_Os03g427304/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38860Os.46858.1.S1_at11/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_x_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38870Os.34841.1.S1_at11/1110+20372404..20373841heavy metal-associated domain containing protein, expressed
LOC_Os10g38880Os.8508.1.S1_at11/1110+20384821..20385928uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os10g38890Os.46523.1.S1_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.3.S1_x_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.2.S1_at10/1110+20389487..20393177expressed protein
LOC_Os10g38900Os.11300.1.S2_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38900Os.11300.1.S1_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38910Os.11300.2.S1_at11/1110+20399820..20400770expressed protein
LOC_Os10g38920Os.14197.1.S1_at11/1110+20401537..20404370Protein kinase domain containing protein, expressed
LOC_Os10g38930Os.26877.1.A1_at11/1110+20407303..20408626ornithine cyclodeaminase/mu-crystallin family protein, putative, expressed
LOC_Os10g38934NANA10+20412055..20412143NA
LOC_Os10g38940Os.46633.1.A1_at11/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed
LOC_Os10g38940OsAffx.24953.1.S1_s_at1/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46523.1.S1_at--276--5271Chr10:20391430..20391454 (25 bp)
GAATGCTATAGCAATATTAACTTTA
LOC_Os10g38890
Os.46523.1.S1_at--257--2051Chr10:20391411..20391435 (25 bp)
ACTTTATGACATGTCTTTCTATCTC
LOC_Os10g38890
Os.46523.1.S1_at--1123--3751Chr10:20391389..20391413 (25 bp)
CTCTTGCTTTTCTCTTGTAAGCATT
LOC_Os10g38890
Os.46523.1.S1_at--751--7052Chr10:20391373..20391397 (25 bp)
GTAAGCATTATCACTTTGTCCAACT
LOC_Os10g38890
Os.46523.1.S1_at--553--10412Chr10:20391366..20391390 (25 bp)
TTATCACTTTGTCCAACTCAACTTC
LOC_Os10g38890
Os.46523.1.S1_at--741--1992Chr10:20391361..20391385 (25 bp)
ACTTTGTCCAACTCAACTTCGTCCT
LOC_Os10g38890
Os.46523.1.S1_at--845--4292Chr10:20391339..20391363 (25 bp)
CCTCTTGCCATCCTGTTGTTGAAGT
LOC_Os10g38890
Os.46523.1.S1_at--762--6651Chr10:20391322..20391346 (25 bp)
GTTGAAGTTGTCTGTTATGTATCTC
LOC_Os10g38890
Os.46523.1.S1_at--943--6631Chr10:20391316..20391340 (25 bp)
GTTGTCTGTTATGTATCTCTTGCTT
LOC_Os10g38890
Os.46523.1.S1_at--1096--7171Chr10:20391313..20391337 (25 bp)
GTCTGTTATGTATCTCTTGCTTAGG
LOC_Os10g38890
Os.46523.1.S1_at--246--9531Chr10:20391301..20391325 (25 bp)
TCTCTTGCTTAGGATGTGTTGCATC
LOC_Os10g38890
Target Sequence 
GAATGCTATAGCAATATTAACTTTATGACATGTCTTTCTATCTCTTGCTTTTCTCTTGTAAGCATTATCACTTTGTCCAA
CTCAACTTCGTCCTCTTGCCATCCTGTTGTTGAAGTTGTCTGTTATGTATCTCTTGCTTAGGATGTGTTGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis