Browse Element(s) Details


Os.11300.2.S1_at

Description gb:AK111957.1
DB_XREF= gi:37988620
TID=Os.11300.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0053C23.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H09, full insert sequence.
FL= gb:AK111957.1 gb:AK099073.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3891011/11expressed protein
LOC_Os06g511801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38880Os.8508.1.S1_at11/1110+20384821..20385928uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os10g38890Os.46523.1.S1_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.3.S1_x_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.2.S1_at10/1110+20389487..20393177expressed protein
LOC_Os10g38900Os.11300.1.S2_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38900Os.11300.1.S1_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38910Os.11300.2.S1_at11/1110+20399820..20400770expressed protein
LOC_Os10g38920Os.14197.1.S1_at11/1110+20401537..20404370Protein kinase domain containing protein, expressed
LOC_Os10g38930Os.26877.1.A1_at11/1110+20407303..20408626ornithine cyclodeaminase/mu-crystallin family protein, putative, expressed
LOC_Os10g38934NANA10+20412055..20412143NA
LOC_Os10g38940Os.46633.1.A1_at11/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed
LOC_Os10g38940OsAffx.24953.1.S1_s_at1/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11300.2.S1_at--858--9251Chr10:20400306..20400330 (25 bp)
TCCTCCGCCGGATCATGTTCATGGT
LOC_Os10g38910
Os.11300.2.S1_at--1023--3951Chr10:20400298..20400322 (25 bp)
CGGATCATGTTCATGGTCGGCGTCC
LOC_Os10g38910
Os.11300.2.S1_at--551--4651Chr10:20400261..20400285 (25 bp)
GCGTCGGGCTGCTCAACCTGTACGG
LOC_Os10g38910
Os.11300.2.S1_at--476--8511Chr10:20400087..20400111 (25 bp)
TGGAAGAGGCCCGAGCCAACTGGCC
LOC_Os10g38910
Os.11300.2.S1_at--597--5731Chr10:20400018..20400042 (25 bp)
GACTGTACATTGATGCTAAATTGCT
LOC_Os10g38910
Os.11300.2.S1_at--655--2252Chr06:30962760..30962779 (20 bp)
AAATATGTGTACCTTGCCAGTTCAG
LOC_Os06g51180
Os.11300.2.S1_at--1083--6971Chr10:20399957..20399981 (25 bp)
GTACCTTGCCAGTTCAGTGTGGTAT
LOC_Os10g38910
Os.11300.2.S1_at--311--7471Chr10:20399941..20399965 (25 bp)
GTGTGGTATATACTACATTTCGTAA
LOC_Os10g38910
Os.11300.2.S1_at--770--6731Chr10:20399901..20399925 (25 bp)
GTTCTTGGTTAATCCGCAATTGCAT
LOC_Os10g38910
Os.11300.2.S1_at--99--3311Chr10:20399856..20399880 (25 bp)
CACAGCAAGTAACACTAGTTGTCTT
LOC_Os10g38910
Os.11300.2.S1_at--161--2191Chr10:20399845..20399869 (25 bp)
ACACTAGTTGTCTTTGAGATGCTGA
LOC_Os10g38910
Target Sequence 
TCCTCCGCCGGATCATGTTCATGGTCGGCGTCCCGATGGCGTCCGGCGTCGGGCTGCTCAACCTGTACGGCGCGCTGGAG
CGCGGCCGGGGCGTCGCCGTGCCGTCGTGGCTGCCGCTGCTGACCATCCTCGTCNCCTTCGGCACGTCGGCGCTGGGGAT
CGCCTTCGGGACGCTGTCGGCGAGCTGGGACCCGGAGAAGGAAGGGTCGCTGCTCGGGCTGGAAGAGGCCCGAGCCAACT
GGCCCGTGCTGTGGGAGGAAGAAATCGAGAAGGCCAAGAAGAAGAAATGACTGTACATTGATGCTAAATTGCTACTAGTA
GAAAGTACAGTAGAGCACTGAAAATATGTGTACCTTGCCAGTTCAGTGTGGTATATACTACATTTCGTAATGAGGGGATT
GATTAGTTCTTGGTTAATCCGCAATTGCATGTAGATATGCTATAAATTTTCACAGCAAGTAACACTAGTTGTCTTTGAGA
TGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11300.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis