Browse Element(s) Details


Os.14197.1.S1_at

Description gb:BI805280
DB_XREF= gi:15852484
DB_XREF=S034H08
CLONE=S034H08
TID=Os.14197.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.14197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0053C23.3), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3892011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38880Os.8508.1.S1_at11/1110+20384821..20385928uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os10g38890Os.46523.1.S1_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.3.S1_x_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.2.S1_at10/1110+20389487..20393177expressed protein
LOC_Os10g38900Os.11300.1.S2_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38900Os.11300.1.S1_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38910Os.11300.2.S1_at11/1110+20399820..20400770expressed protein
LOC_Os10g38920Os.14197.1.S1_at11/1110+20401537..20404370Protein kinase domain containing protein, expressed
LOC_Os10g38930Os.26877.1.A1_at11/1110+20407303..20408626ornithine cyclodeaminase/mu-crystallin family protein, putative, expressed
LOC_Os10g38934NANA10+20412055..20412143NA
LOC_Os10g38940Os.46633.1.A1_at11/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed
LOC_Os10g38940OsAffx.24953.1.S1_s_at1/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed
LOC_Os10g38950Os.15044.1.S1_at11/1110+20426504..20430325Mitogen-activated protein kinase homolog 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14197.1.S1_at--321--2511Chr10:20402294..20402417 (25 bp)
AACATTTGGGTACGTTGCGCCTGAG
LOC_Os10g38920
Os.14197.1.S1_at--794--8251Chr10:20402194..20402218 (25 bp)
GGCAGAACTCCTGTGGATTACACTA
LOC_Os10g38920
Os.14197.1.S1_at--541--7511Chr10:20402182..20402206 (25 bp)
GTGGATTACACTAGGCCAGCACCAG
LOC_Os10g38920
Os.14197.1.S1_at--741--5071Chr10:20401895..20401919 (25 bp)
GCACGTCGTCCATATGCTCGAAGAT
LOC_Os10g38920
Os.14197.1.S1_at--3--1311Chr10:20401752..20401772 (21 bp)
AGATGAACTGCAGCTTGCGCGGGAT
LOC_Os10g38920
Os.14197.1.S1_at--291--9671Chr10:20401719..20401743 (25 bp)
TCACGCATCCGACAGTTACGAGTAC
LOC_Os10g38920
Os.14197.1.S1_at--110--7991Chr10:20401642..20401666 (25 bp)
GGCTTAGAATTCTCTGGTCGTTGGA
LOC_Os10g38920
Os.14197.1.S1_at--1130--1251Chr10:20401610..20401634 (25 bp)
AGATTTTCGCATTCAGGCTCACAAC
LOC_Os10g38920
Os.14197.1.S1_at--731--8311Chr10:20401595..20401619 (25 bp)
GGCTCACAACCAGATGTTCTTGTAC
LOC_Os10g38920
Os.14197.1.S1_at--687--6731Chr10:20401580..20401604 (25 bp)
GTTCTTGTACAAGTCGATCTCTTAT
LOC_Os10g38920
Os.14197.1.S1_at--1075--6411Chr10:20401565..20401589 (25 bp)
GATCTCTTATCTTTTACGTTTGTAT
LOC_Os10g38920
Target Sequence 
AACATTTGGGTACGTTGCGCCTGAGTACGCAAGAACTGGGATGCTAAACGAGAGGAGCGACGTCTATAGCTTCGGGGTGC
TCATCATGGAGATCATATCAGGCAGAACTCCTGTGGATTACACTAGGCCAGCACCAGAGGTGAACTTGGTTGAGTGGCTG
AAGCGCATGGTCGCCGAGAGGAGGGTGGAGGAGGTGGTGGACCCCAGGCTGCCGGAGACGCCGCCGCCCAAGGTGCTGAA
GCGCGCCGTCCTCGCCGCGCTCCGGTGCGTCGACCCCGACGGCGGCCAGAGACCAACCATGGGGCACGTCGTCCATATGC
TCGAAGATGACCTCAAATTCAGAGATGAACTGCAGCTTGCGCGGGATCTGTCGCCTCACGCATCCGACAGTTACGAGTAC
GAGCTGTGAGCTTGGCGGAGGAATGTGTCGTTGCGAGGCAGAGTTTGTATGGGGCTTAGAATTCTCTGGTCGTTGGAGAT
TACTAGATTTTCGCATTCAGGCTCACAACCAGATGTTCTTGTACAAGTCGATCTCTTATCTTTTACGTTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis