Browse Element(s) Details


Os.26877.1.A1_at

Description gb:AK106036.1
DB_XREF= gi:32991245
TID=Os.26877.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0053C23.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-D08, full insert sequence.
FL= gb:AK106036.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3893011/11ornithine cyclodeaminase/mu-crystallin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38880Os.8508.1.S1_at11/1110+20384821..20385928uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os10g38890Os.46523.1.S1_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.3.S1_x_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.2.S1_at10/1110+20389487..20393177expressed protein
LOC_Os10g38900Os.11300.1.S2_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38900Os.11300.1.S1_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38910Os.11300.2.S1_at11/1110+20399820..20400770expressed protein
LOC_Os10g38920Os.14197.1.S1_at11/1110+20401537..20404370Protein kinase domain containing protein, expressed
LOC_Os10g38930Os.26877.1.A1_at11/1110+20407303..20408626ornithine cyclodeaminase/mu-crystallin family protein, putative, expressed
LOC_Os10g38934NANA10+20412055..20412143NA
LOC_Os10g38940Os.46633.1.A1_at11/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed
LOC_Os10g38940OsAffx.24953.1.S1_s_at1/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed
LOC_Os10g38950Os.15044.1.S1_at11/1110+20426504..20430325Mitogen-activated protein kinase homolog 4, putative, expressed
LOC_Os10g38954NANA10+20429918..20431210hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0005212molecular_functionstructural constituent of eye lens
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26877.1.A1_at--723--371Chr10:20408244..20408268 (25 bp)
ATCACGGTGTTCAAGTCCGTCGGGA
LOC_Os10g38930
Os.26877.1.A1_at--754--8591Chr10:20408275..20408299 (25 bp)
TGGTCGATCTTTTGGCGGCGCAGCT
LOC_Os10g38930
Os.26877.1.A1_at--130--9331Chr10:20408299..20408323 (25 bp)
TCGCCTACGAGACTTACATTGCTAC
LOC_Os10g38930
Os.26877.1.A1_at--529--5691Chr10:20408309..20408333 (25 bp)
GACTTACATTGCTACAACCACCAAG
LOC_Os10g38930
Os.26877.1.A1_at--597--671Chr10:20408339..20408363 (25 bp)
ATGAACTCGATGCATCATGGATGGG
LOC_Os10g38930
Os.26877.1.A1_at--685--6251Chr10:20408358..20408382 (25 bp)
GATGGGTTAGTTTCAGAGACTGCAA
LOC_Os10g38930
Os.26877.1.A1_at--1090--8771Chr10:20408461..20408485 (25 bp)
TGTTTACTCGCCACTGATTAAAATA
LOC_Os10g38930
Os.26877.1.A1_at--1001--10331Chr10:20408490..20408514 (25 bp)
TTTAGTATGGCCTTGCAATTCTCTG
LOC_Os10g38930
Os.26877.1.A1_at--492--3151Chr10:20408506..20408530 (25 bp)
AATTCTCTGTTCTTTGTACCTGATG
LOC_Os10g38930
Os.26877.1.A1_at--249--6091Chr10:20408550..20408574 (25 bp)
GAGTACTGTAATTCGATTGTTCGCT
LOC_Os10g38930
Os.26877.1.A1_at--899--6591Chr10:20408564..20408588 (25 bp)
GATTGTTCGCTTTTGTAACCTATGA
LOC_Os10g38930
Target Sequence 
ATCACGGTGTTCAAGTCCGTCGGGACGGCGGTGGTCGATCTTTTGGCGGCGCAGCTCGCCTACGAGACTTACATTGCTAC
AACCACCAAGAAGACATGAACTCGATGCATCATGGATGGGTTAGTTTCAGAGACTGCAAGAAGGGTGTTTCNTTTCAGAG
ATTCGTCATAGAAGTACAAATAAATTGGTGAGAATGGTTATGATCANTNTCCATAGCANTGTTTACTCGCCACTGATTAA
AATAAAAATTTAGTATGGCCTTGCAATTCTCTGTTCTTTGTACCTGATGATAAGATGTTTTCTGCAAGGAGTACTGTAAT
TCGATTGTTCGCTTTTGTAACCTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26877.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis