Browse Element(s) Details


Os.15044.1.S1_at

Description gb:AK111579.1
DB_XREF= gi:37988242
TID=Os.15044.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15044 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinethreonine protein kinase (OSJNBa0053C23.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088I11, full insert sequence.
FL= gb:AK111579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3895011/11Mitogen-activated protein kinase homolog 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38920Os.14197.1.S1_at11/1110+20401537..20404370Protein kinase domain containing protein, expressed
LOC_Os10g38930Os.26877.1.A1_at11/1110+20407303..20408626ornithine cyclodeaminase/mu-crystallin family protein, putative, expressed
LOC_Os10g38934NANA10+20412055..20412143NA
LOC_Os10g38940Os.46633.1.A1_at11/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed
LOC_Os10g38940OsAffx.24953.1.S1_s_at1/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed
LOC_Os10g38950Os.15044.1.S1_at11/1110+20426504..20430325Mitogen-activated protein kinase homolog 4, putative, expressed
LOC_Os10g38954NANA10+20429918..20431210hypothetical protein
LOC_Os10g38960OsAffx.30716.1.S1_at11/1110+20434474..20436498lectin receptor kinase 7, putative
LOC_Os10g38960OsAffx.30716.1.S1_x_at11/1110+20434474..20436498lectin receptor kinase 7, putative
LOC_Os10g38970Os.10203.1.S1_at11/1110+20438807..20447653expressed protein
LOC_Os10g38980Os.26772.1.S1_x_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.3.S1_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.2.S1_at2/1110+20449932..20453909expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000169biological_processactivation of MAPK activity during osmolarity sensing
GO:0000302biological_processresponse to reactive oxygen species
GO:0006950biological_processresponse to stress
GO:0006970biological_processresponse to osmotic stress
GO:0006979biological_processresponse to oxidative stress
GO:0007165biological_processsignal transduction
GO:0009607biological_processresponse to biotic stimulus
GO:0009723biological_processresponse to ethylene stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009868biological_processjasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200biological_processresponse to chitin
GO:0016310biological_processphosphorylation
GO:0042830biological_processdefense response to pathogenic bacteria
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004707molecular_functionMAP kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15044.1.S1_at--1070--9951Chr10:20429210..20429234 (25 bp)
TACCACAGTACCCAAGGCAGGACTT
LOC_Os10g38950
Os.15044.1.S1_at--290--10651Chr10:20429245..20429269 (25 bp)
TTCCGCAACATGTCTGCTGGTGCAG
LOC_Os10g38950
Os.15044.1.S1_at--506--7751Chr10:20429292..20429316 (25 bp)
GGTGTTTGACCCAAGCAGACGGATA
LOC_Os10g38950
Os.15044.1.S1_at--77--10271Chr10:20429480..20429504 (25 bp)
TTTGAGCAACCATCCTTTACTGAAG
LOC_Os10g38950
Os.15044.1.S1_at--601--7991Chr10:20429526..20429550 (25 bp)
GGAGGGAATCCTTGGCATTTAATCC
LOC_Os10g38950
Os.15044.1.S1_at--632--8271Chr10:20430026..20430050 (25 bp)
GGCATCTGAAGATCGGTAGCTCTAG
LOC_Os10g38950
Os.15044.1.S1_at--1056--2271Chr10:20430058..20430082 (25 bp)
AAATCCCCTTGCTTTGTGCATCTAT
LOC_Os10g38950
Os.15044.1.S1_at--957--10031Chr10:20430129..20430153 (25 bp)
TAGTGACAATTTTTCTTAAGGCCTG
LOC_Os10g38950
Os.15044.1.S1_at--1061--5451Chr10:20430193..20430217 (25 bp)
GAACTTGGGCCTGTATTATACCGGT
LOC_Os10g38950
Os.15044.1.S1_at--214--3631Chr10:20430270..20430294 (25 bp)
CTTGAACTGCCCGTGTATATCTGAG
LOC_Os10g38950
Os.15044.1.S1_at--992--471Chr10:20430288..20430312 (25 bp)
ATCTGAGTTGACATCTTCTCTCTGA
LOC_Os10g38950
Target Sequence 
TACCACAGTACCCAAGGCAGGACTTCCGCTTGCGCTTCCGCAACATGTCTGCTGGTGCAGTCGATCTGTTAGAGAAAATG
CTGGTGTTTGACCCAAGCAGACGGATAACTGTTGATGAGGCTCTTCATCACCCATACTTGGCTTCTCTTCATGACATCAA
TGAAGAACCCACCTGCCCAGCACCTTTCAGCTTTGATTTTGAGCAACCATCCTTTACTGAAGAACATATAAAAGAACTCA
TCTGGAGGGAATCCTTGGCATTTAATCCGGATCCTCCCTACTAAGAGCTCAGAGCAATTTATCAATGCTGGCATCTGAAG
ATCGGTAGCTCTAGAAAAGCCAAATCCCCTTGCTTTGTGCATCTATTAATTTTATGCCCACTTGTTGGGCGAATGAGCAT
GGATTATTGTTATAGTGACAATTTTTCTTAAGGCCTGTCTAAAGAAACAACATTTGTATTCCTTATCAGATAGCCTGAAC
TTGGGCCTGTATTATACCGGTTGATTGCATAACTGTTCTTATGTATCTAAGCCTGTAATTGTCTTCACNATGGCTTGAAC
TGCCCGTGTATATCTGAGTTGACATCTTCTCTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis