Browse Element(s) Details


Os.46523.2.S1_at

Description gb:AK069346.1
DB_XREF= gi:32979370
TID=Os.46523.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46523 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0053C23.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010E21, full insert sequence.
FL= gb:AK069346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3889010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38860Os.46858.1.S1_at11/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_x_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38870Os.34841.1.S1_at11/1110+20372404..20373841heavy metal-associated domain containing protein, expressed
LOC_Os10g38880Os.8508.1.S1_at11/1110+20384821..20385928uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os10g38890Os.46523.1.S1_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.3.S1_x_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.2.S1_at10/1110+20389487..20393177expressed protein
LOC_Os10g38900Os.11300.1.S2_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38900Os.11300.1.S1_at11/1110+20395367..20401316angustifolia, putative, expressed
LOC_Os10g38910Os.11300.2.S1_at11/1110+20399820..20400770expressed protein
LOC_Os10g38920Os.14197.1.S1_at11/1110+20401537..20404370Protein kinase domain containing protein, expressed
LOC_Os10g38930Os.26877.1.A1_at11/1110+20407303..20408626ornithine cyclodeaminase/mu-crystallin family protein, putative, expressed
LOC_Os10g38934NANA10+20412055..20412143NA
LOC_Os10g38940Os.46633.1.A1_at11/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed
LOC_Os10g38940OsAffx.24953.1.S1_s_at1/1110+20414787..20416758beta-carotene hydroxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46523.2.S1_at--978--1111Chr10:20389692..20389716 (25 bp)
AGTGAGCTGCTGAAAAGTCCTTAGC
LOC_Os10g38890
Os.46523.2.S1_at--1092--5511Chr10:20389630..20389654 (25 bp)
GAAAAGTTTGCAACCTTCAATCATG
LOC_Os10g38890
Os.46523.2.S1_at--731--9011Chr10:20389622..20389646 (25 bp)
TGCAACCTTCAATCATGCATGGTAG
LOC_Os10g38890
Os.46523.2.S1_at--877--6271Chr10:20389598..20389622 (25 bp)
GATGTTAAATGAACAGACCCTATTT
LOC_Os10g38890
Os.46523.2.S1_at--909--5471Chr10:20389588..20389612 (25 bp)
GAACAGACCCTATTTGTAATAATAT
LOC_Os10g38890
Os.46523.2.S1_at--641--3071Chr10:20389544..20389568 (25 bp)
AATAACTTTCAGATACTCTGTTGTA
LOC_Os10g38890
Os.46523.2.S1_at--507--6471Chr10:20389533..20389557 (25 bp)
GATACTCTGTTGTATGCAATCTGCA
LOC_Os10g38890
Os.46523.2.S1_at--60--6911Chr10:20389522..20389546 (25 bp)
GTATGCAATCTGCAAATCATCAGTC
LOC_Os10g38890
Os.46523.2.S1_at--350--852Chr10:20389496..20389520 (25 bp)
ATGGCATGGCCATAGGTCGACTTCC
LOC_Os10g38890
Os.46523.2.S1_at--147--871Chr10:20389491..20389515 (25 bp)
ATGGCCATAGGTCGACTTCCAGTTA
LOC_Os10g38890
Os.46523.2.S1_at--357--4231Chr10:20389487..20389511 (25 bp)
CCATAGGTCGACTTCCAGTTACCTG
NONE
Target Sequence 
AGTGAGCTGCTGAAAAGTCCTTAGCAAATAATAGTAATGACAAAGGATATGATATCTTTTCTGAAAAGTTTGCAACCTTC
AATCATGCATGGTAGATGTTAAATGAACAGACCCTATTTGTAATAATATTGTTCATAAGTTATGTCAAAATAACTTTCAG
ATACTCTGTTGTATGCAATCTGCAAATCATCAGTCAATGGCATGGCCATAGGTCGACTTCCAGTTACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46523.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis