Browse Element(s) Details


OsAffx.20500.1.S1_at

Description gb:NM_195840.1
DB_XREF= gi:37533039
TID=OsAffx.20500.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015I18.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g388602/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38834Os.46875.1.S1_at11/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38834Os.52782.1.S1_at1/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38850OsAffx.30715.2.S1_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38850OsAffx.30715.2.S1_s_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38850Os.52167.1.S1_x_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38860Os.46858.1.S1_at11/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_x_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38870Os.34841.1.S1_at11/1110+20372404..20373841heavy metal-associated domain containing protein, expressed
LOC_Os10g38880Os.8508.1.S1_at11/1110+20384821..20385928uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os10g38890Os.46523.1.S1_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.3.S1_x_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.2.S1_at10/1110+20389487..20393177expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20500.1.S1_at--345--3395Chr06:2441825..2441844 (20 bp)
CAGCATCGGGACTTCGGCGATACGC
NONE
OsAffx.20500.1.S1_at--639--1538Chr06:2441825..2441845 (21 bp)
AGCATCGGGACTTCGGCGATACGCG
NONE
OsAffx.20500.1.S1_at--490--3976Chr02:20070147..20070171 (25 bp)
CGGGACTTCGGCGATACGCGACGAC
NONE
OsAffx.20500.1.S1_at--449--8136Chr02:20070149..20070173 (25 bp)
GGACTTCGGCGATACGCGACGACGC
NONE
OsAffx.20500.1.S1_at--381--5697Chr02:20070150..20070173 (24 bp)
GACTTCGGCGATACGCGACGACGCG
NONE
OsAffx.20500.1.S1_at--558--5812Chr01:34552552..34552664 (25 bp)
GACGCCTGGACGGGAAGCATACTTA
NONE
OsAffx.20500.1.S1_at--390--4272Chr01:34552556..34552668 (25 bp)
CCTGGACGGGAAGCATACTTAATAT
NONE
OsAffx.20500.1.S1_at--562--3892Chr01:34552557..34552669 (25 bp)
CTGGACGGGAAGCATACTTAATATT
NONE
OsAffx.20500.1.S1_at--622--8112Chr01:34552559..34552671 (25 bp)
GGACGGGAAGCATACTTAATATTTT
NONE
OsAffx.20500.1.S1_at--791--5752Chr01:34552560..34552672 (25 bp)
GACGGGAAGCATACTTAATATTTTA
NONE
OsAffx.20500.1.S1_at--558--7615Chr03:5506921..5506940 (20 bp)
GGGAAGCATACTTAATATTTTAGGG
NONE
Target Sequence 
CAGCATCGGGACTTCGGCGATACGCGACGACGCGGACGCCTGGACGGGAAGCATACTTAATATTTTAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis