Browse Element(s) Details


Os.52167.1.S1_x_at

Description gb:AK065403.1
DB_XREF= gi:32975421
TID=Os.52167.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013012B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013012B02, full insert sequence.
FL= gb:AK065403.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3885011/11amine oxidase, flavin-containing family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38820Os.46836.1.S1_at9/1110+20331077..20333627bZIP transcription factor family protein, expressed
LOC_Os10g38834Os.46875.1.S1_at11/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38834Os.52782.1.S1_at1/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38850OsAffx.30715.2.S1_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38850OsAffx.30715.2.S1_s_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38850Os.52167.1.S1_x_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38860Os.46858.1.S1_at11/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_x_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38870Os.34841.1.S1_at11/1110+20372404..20373841heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009911biological_processpositive regulation of flower development
GO:0016575biological_processhistone deacetylation
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52167.1.S1_x_at--311--7851Chr10:20355281..20355305 (25 bp)
GGTACCAGTTCTGATAGCACTACTT
LOC_Os10g38850
Os.52167.1.S1_x_at--121--10071Chr10:20355367..20355391 (25 bp)
TAGTGGTTCTCCGTAAGCTCTTTAA
LOC_Os10g38850
Os.52167.1.S1_x_at--177--7991Chr10:20355392..20355416 (25 bp)
GGATGCTTCTGTACCAGATCCAGTT
LOC_Os10g38850
Os.52167.1.S1_x_at--50--6371Chr10:20355408..20355432 (25 bp)
GATCCAGTTGCATCTGTTGTGACAA
LOC_Os10g38850
Os.52167.1.S1_x_at--850--6171Chr10:20355457..20355481 (25 bp)
GAGGAGCTTACTCTTATGTTGCAGT
LOC_Os10g38850
Os.52167.1.S1_x_at--10--8211Chr10:20355513..20355537 (25 bp)
GGAAGGCCTGTTTCAGACTGTTTAT
LOC_Os10g38850
Os.52167.1.S1_x_at--677--4731Chr10:20355612..20355636 (25 bp)
GCTGTTCGGATCATTGACTTGGTAC
LOC_Os10g38850
Os.52167.1.S1_x_at--711--8671Chr10:20355744..20355768 (25 bp)
TGTGAACTTTCAACTGCTCTGTGCA
LOC_Os10g38850
Os.52167.1.S1_x_at--394--4811Chr10:20355759..20355783 (25 bp)
GCTCTGTGCAAAACCTCATCTGATG
LOC_Os10g38850
Os.52167.1.S1_x_at--199--8871Chr10:20355779..20355803 (25 bp)
TGATGCATCCTATCCACTATTTAGC
LOC_Os10g38850
Os.52167.1.S1_x_at--288--2511Chr10:20355845..20355869 (25 bp)
AACATCAGGGCGTCTACATTTGGCT
LOC_Os10g38850
Target Sequence 
GGTACCAGTTCTGATAGCACTACTTGTTGGGAAGGCTGCTATAGATGGACAGAGTATCAGTTCTGATGATCATGTTAAGA
ATGCTATAGTGGTTCTCCGTAAGCTCTTTAAGGATGCTTCTGTACCAGATCCAGTTGCATCTGTTGTGACAAACTGGGGA
CTTGATCCTTTTAGCAGAGGAGCTTACTCTTATGTTGCAGTAGGAGCATCGGGAAGGGACTACGACATTCTAGGAAGGCC
TGTTTCAGACTGTTTATTTTTTGCTGGTGAAGCAACATGTAAAGAACACCCAGATACTGTTGGTGGTGCAATTTTAAGTG
GTCTTCGAGAAGCTGTTCGGATCATTGACTTGGTACACAGTGGTAAGGATTATGTGGCTGAGGTTGAAGCTCTACAAACT
TACCAAATGCAGTCAGATAGTGAAAGAAATGAAGTTAAAGACATGTCAAATAAACTTGATGCATGTGAACTTTCAACTGC
TCTGTGCAAAACCTCATCTGATGCATCCTATCCACTATTTAGCAAGGAGACTTTACTGCAAGAAATGTTCTTTAGTGCAA
AAACAACATCAGGGCGTCTACATTTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52167.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis