Browse Element(s) Details


Os.46858.1.S1_at

Description gb:AK107095.1
DB_XREF= gi:32992304
TID=Os.46858.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0053C23.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H06, full insert sequence.
FL= gb:AK107095.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3886011/11hydrolase, alpha/beta fold family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38834Os.46875.1.S1_at11/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38834Os.52782.1.S1_at1/1110+20342115..20348558no apical meristem, putative, expressed
LOC_Os10g38850OsAffx.30715.2.S1_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38850OsAffx.30715.2.S1_s_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38850Os.52167.1.S1_x_at11/1110+20351452..20359395amine oxidase, flavin-containing family protein, expressed
LOC_Os10g38860Os.46858.1.S1_at11/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38860OsAffx.20500.1.S1_x_at2/1110+20362893..20366541hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g38870Os.34841.1.S1_at11/1110+20372404..20373841heavy metal-associated domain containing protein, expressed
LOC_Os10g38880Os.8508.1.S1_at11/1110+20384821..20385928uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os10g38890Os.46523.1.S1_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.3.S1_x_at11/1110+20389487..20393177expressed protein
LOC_Os10g38890Os.46523.2.S1_at10/1110+20389487..20393177expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46858.1.S1_at--792--6931Chr10:20363448..20363472 (25 bp)
GTAGGGATGATGAGCTCCTTCCTGT
LOC_Os10g38860
Os.46858.1.S1_at--469--1591Chr10:20363436..20363460 (25 bp)
AGCTCCTTCCTGTGCAATGCAGTTA
LOC_Os10g38860
Os.46858.1.S1_at--840--5291Chr10:20363405..20363429 (25 bp)
GAAGGCGAAAATACCTCGTGCCCGT
LOC_Os10g38860
Os.46858.1.S1_at--616--9411Chr10:20363390..20363414 (25 bp)
TCGTGCCCGTGTTAAGGTTGTCGAC
LOC_Os10g38860
Os.46858.1.S1_at--266--5751Chr10:20363368..20363392 (25 bp)
GACGGCAAGGATCATGTCACCATTG
LOC_Os10g38860
Os.46858.1.S1_at--263--7111Chr10:20363353..20363377 (25 bp)
GTCACCATTGTTGTCAGAAGGCAGA
LOC_Os10g38860
Os.46858.1.S1_at--299--91Chr10:20363036..20363060 (25 bp)
ATTCTTACCGGGTCCTGTGTATAAT
LOC_Os10g38860
Os.46858.1.S1_at--550--2971Chr10:20363004..20363028 (25 bp)
AATGGTGAGTGGCTCCAGGCTTTCA
LOC_Os10g38860
Os.46858.1.S1_at--68--8311Chr10:20362987..20363011 (25 bp)
GGCTTTCAGCTGTAAACCTGTGGAA
LOC_Os10g38860
Os.46858.1.S1_at--573--5511Chr10:20362927..20362951 (25 bp)
GAAAATTCCTACTTCTGTTATCAGT
LOC_Os10g38860
Os.46858.1.S1_at--622--6791Chr10:20362911..20362935 (25 bp)
GTTATCAGTCCATTCTCATTTTTTA
LOC_Os10g38860
Target Sequence 
GTAGGGATGATGAGCTCCTTCCTGTGCAATGCAGTTATGCAGTGAAGGCGAAAATACCTCGTGCCCGTGTTAAGGTTGTC
GACGGCAAGGATCATGTCACCATTGTTGTCAGAAGGCAGAAAGAACTAGCCATGGAGCTGGAGGAGATCTGGAACAGAAA
ACGGTGACATGATCACAATGAGTAAATAGGAGAAATCACAAAGTGTGTTAAAAGGGGCACCTCACCAGATGAGAGAAGTT
GGGTCTTCCAGAGAAGAGCAAGACTGCAACGAACAAACACATTTCTGAATTCAATAGGAAACTGAAGAGCAAACAAGGCT
CGACAGAAATGTGAAGAAGGTTACCTGATTACTTTTACTTTTTTTTTCACCTTTTTTTTCCTTCTCAAGTATTCATATTG
AAGATTGGGAAAATTCTTACCGGGTCCTGTGTATAATTATGATAAATGGTGAGTGGCTCCAGGCTTTCAGCTGTAAACCT
GTGGAACAGAATGTGATATGATTAACTTGTGGGGATTCTTAGAAAATTCCTACTTCTGTTATCAGTCCATTCTCATTTTT
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis