Browse Element(s) Details


Os.20885.1.S1_at

Description gb:AK107046.1
DB_XREF= gi:32992255
TID=Os.20885.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20885 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C09, full insert sequence.
FL= gb:AK107046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0817011/11serine/threonine-protein kinase NAK, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08130OsAffx.25014.1.S1_at11/113+4127938..4129282hypothetical protein
LOC_Os03g08140Os.7286.1.S1_at11/113+4129867..4136536Tubulin-tyrosine ligase family protein, expressed
LOC_Os03g08150OsAffx.12776.1.S1_at11/113+4136722..4137464Cupin family protein, expressed
LOC_Os03g08160OsAffx.3171.1.S1_at11/113+4140669..4144127hypothetical protein
LOC_Os03g08160Os.7286.1.S1_at1/113+4140669..4144127hypothetical protein
LOC_Os03g08170Os.20885.1.S1_at11/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08170OsAffx.30714.1.S1_x_at1/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08180OsAffx.12777.1.S1_at11/113+4158638..4159174hypothetical protein
LOC_Os03g08190OsAffx.25015.1.S1_at11/113+4159536..4159937hypothetical protein
LOC_Os03g08200OsAffx.12778.1.S1_at11/113+4160779..4161603expressed protein
LOC_Os03g08210OsAffx.25016.1.S1_at11/113+4163938..4164646hypothetical protein
LOC_Os03g08220Os.9616.1.S1_at11/113+4166275..4172317lipoxygenase 6, putative, expressed
LOC_Os03g08230OsAffx.3172.1.S1_at11/113+4173447..4175426cation exchanger, putative, expressed
LOC_Os03g08230Os.40052.1.A1_s_at11/113+4173447..4175426cation exchanger, putative, expressed
LOC_Os03g08240NANA3+4176306..4176524hypothetical protein
LOC_Os03g08250Os.14248.1.S1_at10/113+4178926..4179852expressed protein
LOC_Os03g08260OsAffx.25018.1.S1_at10/113+4181709..4182443hypothetical protein
LOC_Os03g08270Os.11888.1.S1_s_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.3.S1_x_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.4.S1_at10/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270OsAffx.19395.1.S1_at1/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20885.1.S1_at--260--8691Chr03:4157883..4157907 (25 bp)
TGTGCAGCGGGAATGACTCGGTTTT
LOC_Os03g08170
Os.20885.1.S1_at--125--3011Chr03:4157894..4157918 (25 bp)
AATGACTCGGTTTTGCTTGCGTTTG
LOC_Os03g08170
Os.20885.1.S1_at--43--4651Chr03:4157912..4157936 (25 bp)
GCGTTTGTCTGTACTCGTCGAGCTA
LOC_Os03g08170
Os.20885.1.S1_at--966--3031Chr03:4157965..4157989 (25 bp)
AATCCGGATCAGTGAGTTGGCTCGT
LOC_Os03g08170
Os.20885.1.S1_at--626--4991Chr03:4158016..4158040 (25 bp)
GCATGTTATTATTTGTCTTAGGCTT
LOC_Os03g08170
Os.20885.1.S1_at--875--3491Chr03:4158147..4158171 (25 bp)
CATGTTGGGAGGTTTCTCTAGTATC
LOC_Os03g08170
Os.20885.1.S1_at--626--10051Chr03:4158165..4158189 (25 bp)
TAGTATCTTCCCAGCGCCGTGAAAT
LOC_Os03g08170
Os.20885.1.S1_at--15--1671Chr03:4158177..4158201 (25 bp)
AGCGCCGTGAAATATCTCTGTTGAT
LOC_Os03g08170
Os.20885.1.S1_at--901--1411Chr03:4158202..4158226 (25 bp)
AGACACTGTATGCTGTACGCGAGTA
LOC_Os03g08170
Os.20885.1.S1_at--1009--2751Chr03:4158246..4158270 (25 bp)
AAGACTGTAGGTTTTCTCCGTGTGC
LOC_Os03g08170
Os.20885.1.S1_at--334--3811Chr03:4158261..4158285 (25 bp)
CTCCGTGTGCACTGTATTTAAATTT
LOC_Os03g08170
Target Sequence 
TGTGCAGCGGGAATGACTCGGTTTTGCTTGCGTTTGTCTGTACTCGTCGAGCTACGTGCTGATCAAGCGATGCCGGTAAA
TTAATCCGGATCAGTGAGTTGGCTCGTGGGTAAAAAATGATTGTGGATTTGAAGCATGTTATTATTTGTCTTAGGCTTGA
ATAGCAGAATAGGATTAGAGCGTGTAAATACGAGCATGTCAGACGTACATGAGCAAATTGAGCATGTAAACAGTTTGACA
AAATATGGATGGTTNATCACTTCTCATGTTGGGAGGTTTCTCTAGTATCTTCCCAGCGCCGTGAAATATCTCTGTTGATA
GACACTGTATGCTGTACGCGAGTATGTTTTTACTGTTTGCTGAAAGACTGTAGGTTTTCTCCGTGTGCACTGTATTTAAA
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis