Browse Element(s) Details


OsAffx.12778.1.S1_at

Description tigr:9631.m00757
TID=OsAffx.12778.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0820011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08140Os.7286.1.S1_at11/113+4129867..4136536Tubulin-tyrosine ligase family protein, expressed
LOC_Os03g08150OsAffx.12776.1.S1_at11/113+4136722..4137464Cupin family protein, expressed
LOC_Os03g08160OsAffx.3171.1.S1_at11/113+4140669..4144127hypothetical protein
LOC_Os03g08160Os.7286.1.S1_at1/113+4140669..4144127hypothetical protein
LOC_Os03g08170Os.20885.1.S1_at11/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08170OsAffx.30714.1.S1_x_at1/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08180OsAffx.12777.1.S1_at11/113+4158638..4159174hypothetical protein
LOC_Os03g08190OsAffx.25015.1.S1_at11/113+4159536..4159937hypothetical protein
LOC_Os03g08200OsAffx.12778.1.S1_at11/113+4160779..4161603expressed protein
LOC_Os03g08210OsAffx.25016.1.S1_at11/113+4163938..4164646hypothetical protein
LOC_Os03g08220Os.9616.1.S1_at11/113+4166275..4172317lipoxygenase 6, putative, expressed
LOC_Os03g08230OsAffx.3172.1.S1_at11/113+4173447..4175426cation exchanger, putative, expressed
LOC_Os03g08230Os.40052.1.A1_s_at11/113+4173447..4175426cation exchanger, putative, expressed
LOC_Os03g08240NANA3+4176306..4176524hypothetical protein
LOC_Os03g08250Os.14248.1.S1_at10/113+4178926..4179852expressed protein
LOC_Os03g08260OsAffx.25018.1.S1_at10/113+4181709..4182443hypothetical protein
LOC_Os03g08270Os.11888.1.S1_s_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.3.S1_x_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.4.S1_at10/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270OsAffx.19395.1.S1_at1/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12778.1.S1_at--948--10451Chr03:4161548..4161572 (25 bp)
TTAGCAAGATCTTCTGCAGCAGCTC
LOC_Os03g08200
OsAffx.12778.1.S1_at--134--8851Chr03:4161454..4161478 (25 bp)
TGATCAGAGGGTCGTCTTCAGCGTC
LOC_Os03g08200
OsAffx.12778.1.S1_at--572--411Chr03:4161417..4161441 (25 bp)
ATCATCGGTGCTAGCGGCCAGCTGA
LOC_Os03g08200
OsAffx.12778.1.S1_at--980--9631Chr03:4161389..4161413 (25 bp)
TCAGGGACGGTGATGGCACTGCCAT
LOC_Os03g08200
OsAffx.12778.1.S1_at--822--10331Chr03:4161155..4161179 (25 bp)
TTTCAAGATCCTAAGCCGGTGCTCT
LOC_Os03g08200
OsAffx.12778.1.S1_at--1030--7311Chr03:4161137..4161161 (25 bp)
GTGCTCTGCATGAACGGCGATGTCA
LOC_Os03g08200
OsAffx.12778.1.S1_at--749--751Chr03:4161118..4161142 (25 bp)
ATGTCAGGGTCGCTGTTGAGCCAAA
LOC_Os03g08200
OsAffx.12778.1.S1_at--316--6151Chr03:4161068..4161092 (25 bp)
GAGGTGATCGGGTCATTTTCTCAGA
LOC_Os03g08200
OsAffx.12778.1.S1_at--1123--10571Chr03:4161051..4161075 (25 bp)
TTCTCAGAGAGCTTGCACTGTCAGG
LOC_Os03g08200
OsAffx.12778.1.S1_at--285--1531Chr03:4161024..4161045 (22 bp)
AGCAGGCCATGTCGTAGCACAGATT
LOC_Os03g08200
OsAffx.12778.1.S1_at--1075--7971Chr03:4160873..4160897 (25 bp)
GGATGCTGGCTGGTAAGGACTTCTA
LOC_Os03g08200
Target Sequence 
TTAGCAAGATCTTCTGCAGCAGCTCGCAAGCCGTGCTGATGGTGCGCCGCCGCCCTCCCACGGTGAACGGCGGCGGGTTC
GTCGTCACCGACCGTGATCAGAGGGTCGTCTTCAGCGTCGACGGCTGCGGGATCATCGGTGCTAGCGGCCAGCTGATCGT
CAGGGACGGTGATGGCACTGCCATCCTCTTCATCCACAAGAAGGGAGGAGTTGTTCAAGTGTTGAGCATTAACAATTGGT
GGAAGGGATATCTCATGGACTATGGTGAACCCAGCAAGCTGGTTTTCAGCTTTCAAGATCCTAAGCCGGTGCTCTGCATG
AACGGCGATGTCAGGGTCGCTGTTGAGCCAAAGGGAAGAAAGAGGCACTGGGATTATGAGGTGATCGGGTCATTTTCTCA
GAGAGCTTGCACTGTCAGGAGCCGAGCAGGCCATGTCGTAGCACAGATTGGAGTGAAAGGGATGCTGGCTGGTAAGGACT
TCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis