Browse Element(s) Details


Os.40052.1.A1_s_at

Description gb:CF326916
DB_XREF= gi:33802088
DB_XREF=NACL--01-D02.g1
CLONE=NACL--01-D02
TID=Os.40052.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40052 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_564650.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0823011/11cation exchanger, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08170Os.20885.1.S1_at11/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08170OsAffx.30714.1.S1_x_at1/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08180OsAffx.12777.1.S1_at11/113+4158638..4159174hypothetical protein
LOC_Os03g08190OsAffx.25015.1.S1_at11/113+4159536..4159937hypothetical protein
LOC_Os03g08200OsAffx.12778.1.S1_at11/113+4160779..4161603expressed protein
LOC_Os03g08210OsAffx.25016.1.S1_at11/113+4163938..4164646hypothetical protein
LOC_Os03g08220Os.9616.1.S1_at11/113+4166275..4172317lipoxygenase 6, putative, expressed
LOC_Os03g08230OsAffx.3172.1.S1_at11/113+4173447..4175426cation exchanger, putative, expressed
LOC_Os03g08230Os.40052.1.A1_s_at11/113+4173447..4175426cation exchanger, putative, expressed
LOC_Os03g08240NANA3+4176306..4176524hypothetical protein
LOC_Os03g08250Os.14248.1.S1_at10/113+4178926..4179852expressed protein
LOC_Os03g08260OsAffx.25018.1.S1_at10/113+4181709..4182443hypothetical protein
LOC_Os03g08270Os.11888.1.S1_s_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.3.S1_x_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.4.S1_at10/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270OsAffx.19395.1.S1_at1/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08280Os.3704.1.S1_at11/113+4189643..4192104Proteasome subunit alpha type 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005432molecular_functioncalcium:sodium antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40052.1.A1_s_at--982--3171Chr03:4173880..4173904 (25 bp)
CAATTCTTGGGTTAACTGTGTTAGC
LOC_Os03g08230
Os.40052.1.A1_s_at--182--9751Chr03:4173832..4173856 (25 bp)
TAATGTCAAATGTTGCCTTGGCAAT
LOC_Os03g08230
Os.40052.1.A1_s_at--171--1291Chr03:4173787..4173811 (25 bp)
AGATCGCCATGTCTGGATGCTACGC
LOC_Os03g08230
Os.40052.1.A1_s_at--900--6331Chr03:4173772..4173796 (25 bp)
GATGCTACGCAGGACCTATGTTCAA
LOC_Os03g08230
Os.40052.1.A1_s_at--940--511Chr03:4173726..4173750 (25 bp)
ATCGATGCTGCTTGGAGCTTGGTCA
LOC_Os03g08230
Os.40052.1.A1_s_at--858--51Chr03:4173630..4173654 (25 bp)
ATTGATCTGGGCTCTTGTTATGCTG
LOC_Os03g08230
Os.40052.1.A1_s_at--49--8511Chr03:4173597..4173621 (25 bp)
TGGCATGCAGCCTAACAAGATACTT
LOC_Os03g08230
Os.40052.1.A1_s_at--178--9891Chr03:4173577..4173601 (25 bp)
TACTTGGAGTTGGTCTCATTGCCCT
LOC_Os03g08230
Os.40052.1.A1_s_at--349--9591Chr03:4173562..4173586 (25 bp)
TCATTGCCCTTTACTCAGTTTTTCT
LOC_Os03g08230
Os.40052.1.A1_s_at--283--7951Chr03:4173511..4173535 (25 bp)
GGATATTGCCATTGCCTGGCTTGAG
LOC_Os03g08230
Os.40052.1.A1_s_at--75--4491Chr03:4173498..4173522 (25 bp)
GCCTGGCTTGAGTTAGTTGCATAAT
LOC_Os03g08230
Target Sequence 
CAATTCTTGGGTTAACTGTGTTAGCATGGGGTAATTCGATGGGTGACTTAATGTCAAATGTTGCCTTGGCAATGAATGGA
GGAGATGGTGTGCAGATCGCCATGTCTGGATGCTACGCAGGACCTATGTTCAATACACTTGCTGGATTGGGAATATCGAT
GCTGCTTGGAGCTTGGTCAACAGCACCAAACTCTTATGTTTTTCCTCAAGACAGTTTTTTCATTTACACAATGAGCTTCC
TCGTTGGCGGATTGATCTGGGCTCTTGTTATGCTGCCACGGGGTGGCATGCAGCCTAACAAGATACTTGGAGTTGGTCTC
ATTGCCCTTTACTCAGTTTTTCTTTTTATTAGGGTAAGCAATGCAATGGGGATATTGCCATTGCCTGGCTTGAGTTAGTT
GCATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40052.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis