Browse Element(s) Details


OsAffx.3172.1.S1_at

Description tigr:9631.m00760
TID=OsAffx.3172.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sodiumcalcium exchanger protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0823011/11cation exchanger, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08170Os.20885.1.S1_at11/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08170OsAffx.30714.1.S1_x_at1/113+4152295..4158364serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g08180OsAffx.12777.1.S1_at11/113+4158638..4159174hypothetical protein
LOC_Os03g08190OsAffx.25015.1.S1_at11/113+4159536..4159937hypothetical protein
LOC_Os03g08200OsAffx.12778.1.S1_at11/113+4160779..4161603expressed protein
LOC_Os03g08210OsAffx.25016.1.S1_at11/113+4163938..4164646hypothetical protein
LOC_Os03g08220Os.9616.1.S1_at11/113+4166275..4172317lipoxygenase 6, putative, expressed
LOC_Os03g08230OsAffx.3172.1.S1_at11/113+4173447..4175426cation exchanger, putative, expressed
LOC_Os03g08230Os.40052.1.A1_s_at11/113+4173447..4175426cation exchanger, putative, expressed
LOC_Os03g08240NANA3+4176306..4176524hypothetical protein
LOC_Os03g08250Os.14248.1.S1_at10/113+4178926..4179852expressed protein
LOC_Os03g08260OsAffx.25018.1.S1_at10/113+4181709..4182443hypothetical protein
LOC_Os03g08270Os.11888.1.S1_s_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.3.S1_x_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.4.S1_at10/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270OsAffx.19395.1.S1_at1/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08280Os.3704.1.S1_at11/113+4189643..4192104Proteasome subunit alpha type 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0005432molecular_functioncalcium:sodium antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3172.1.S1_at--229--5451Chr03:4174016..4174040 (25 bp)
GAACGACCTCCACGGAGATTTTTAT
LOC_Os03g08230
OsAffx.3172.1.S1_at--25--3811Chr03:4174009..4174033 (25 bp)
CTCCACGGAGATTTTTATTCCCATG
LOC_Os03g08230
OsAffx.3172.1.S1_at--442--8051Chr03:4174003..4174027 (25 bp)
GGAGATTTTTATTCCCATGGGTGTT
LOC_Os03g08230
OsAffx.3172.1.S1_at--608--10371Chr03:4173997..4174021 (25 bp)
TTTTATTCCCATGGGTGTTGGGAGG
LOC_Os03g08230
OsAffx.3172.1.S1_at--472--8031Chr03:4173977..4174001 (25 bp)
GGAGGGTTTGTGATGAGCATTATCT
LOC_Os03g08230
OsAffx.3172.1.S1_at--549--3591Chr03:4173960..4173984 (25 bp)
CATTATCTGGTTCTACATCATTGCC
LOC_Os03g08230
OsAffx.3172.1.S1_at--334--491Chr03:4173956..4173980 (25 bp)
ATCTGGTTCTACATCATTGCCAATG
LOC_Os03g08230
OsAffx.3172.1.S1_at--305--3911Chr03:4173954..4173978 (25 bp)
CTGGTTCTACATCATTGCCAATGAA
LOC_Os03g08230
OsAffx.3172.1.S1_at--503--3731Chr03:4173948..4173972 (25 bp)
CTACATCATTGCCAATGAACTGGTT
LOC_Os03g08230
OsAffx.3172.1.S1_at--254--9731Chr03:4173675..4173699 (25 bp)
TCAAGACAGCTCTCTCATTTACACA
LOC_Os03g08230
OsAffx.3172.1.S1_at--399--1411Chr03:4173672..4173696 (25 bp)
AGACAGCTCTCTCATTTACACAATG
LOC_Os03g08230
Target Sequence 
GAACGACCTCCACGGAGATTTTTATTCCCATGGGTGTTGGGAGGGTTTGTGATGAGCATTATCTGGTTCTACATCATTGC
CAATGAACTGGTTGCACTTTTAGTTGCTTTTGGAGTGATATTGGGGATCAATCCTTCAATTCTTGGGTTAACTGTGTTAG
CATGGGGTAATTCGATGGGTGACTTAATGTCAAATGTTGCCTTGGCAATGAATGGAGGAGATGGTGTGCAGATCGCCATG
TCTGGATGCTACGCAGGACCTATGTTCAATACACTTGCTGGATTGGGAATATCGATGCTGCTTGGAGCTTGGTCAACAGC
ACCAAACTCTTATGTTCTTCCTCAAGACAGCTCTCTCATTTACACAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis