Browse Element(s) Details


Os.3704.1.S1_at

Description gb:AB026558.1
DB_XREF= gi:8671491
GEN=OsPAA1
TID=Os.3704.1
CNT=72
FEA=FLmRNA
TIER=FL+Stack
STK=17
UG=Os.3704 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsPAA1 mRNA for alpha 1 subunit of 20S proteasome, complete cds.
PROD=alpha 1 subunit of 20S proteasome
FL= gb:AK101031.1 gb:AK059929.1 gb:AK060026.1 gb:AK104324.1 gb:AB026558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0828011/11Proteasome subunit alpha type 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08210OsAffx.25016.1.S1_at11/113+4163938..4164646hypothetical protein
LOC_Os03g08220Os.9616.1.S1_at11/113+4166275..4172317lipoxygenase 6, putative, expressed
LOC_Os03g08230OsAffx.3172.1.S1_at11/113+4173447..4175426cation exchanger, putative, expressed
LOC_Os03g08230Os.40052.1.A1_s_at11/113+4173447..4175426cation exchanger, putative, expressed
LOC_Os03g08240NANA3+4176306..4176524hypothetical protein
LOC_Os03g08250Os.14248.1.S1_at10/113+4178926..4179852expressed protein
LOC_Os03g08260OsAffx.25018.1.S1_at10/113+4181709..4182443hypothetical protein
LOC_Os03g08270Os.11888.1.S1_s_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.3.S1_x_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.4.S1_at10/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270OsAffx.19395.1.S1_at1/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08280Os.3704.1.S1_at11/113+4189643..4192104Proteasome subunit alpha type 6, putative, expressed
LOC_Os03g08290Os.49494.2.A1_at11/113+4201200..4203097expressed protein
LOC_Os03g08300Os.49494.1.S1_at10/113+4202547..4207585glycosyl transferase, group 1 family protein, expressed
LOC_Os03g08310Os.8088.1.S1_at11/113+4211121..4212155ZIM motif family protein, expressed
LOC_Os03g08320Os.10356.1.S1_at11/113+4215841..4217214ZIM motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005634cellular_componentnucleus
GO:0005819cellular_componentspindle
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0009524cellular_componentphragmoplast
GO:0019773cellular_componentproteasome core complex, alpha-subunit complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3704.1.S1_at--475--2731Chr03:4190642..4190666 (25 bp)
AAGCACAAGTCTACACGCAGCATGC
LOC_Os03g08280
Os.3704.1.S1_at--310--691Chr03:4190495..4190637 (25 bp)
ATGAGGCCCCTTGGAGTAGTTGCTA
LOC_Os03g08280
Os.3704.1.S1_at--417--6951Chr03:4190480..4190502 (23 bp)
GTAGTTGCTATGGTCTTGGGCTATG
LOC_Os03g08280
Os.3704.1.S1_at--633--2411Chr03:4190447..4190471 (25 bp)
AAAAACGCTCAACTATTCAAATGTG
LOC_Os03g08280
Os.3704.1.S1_at--159--3951Chr03:4190419..4190443 (25 bp)
CGGCAGGTCACTTCTTTGGACATAA
LOC_Os03g08280
Os.3704.1.S1_at--779--331Chr03:4190243..4190264 (22 bp)
ATAAGGCAACTAGCGCCGGTCTTAA
LOC_Os03g08280
Os.3704.1.S1_at--271--9991Chr03:4190233..4190257 (25 bp)
TAGCGCCGGTCTTAAGGAGCAGGAA
LOC_Os03g08280
Os.3704.1.S1_at--3--9011Chr03:4190183..4190207 (25 bp)
TGAAGGATGACCCACAGTTCTCCTA
LOC_Os03g08280
Os.3704.1.S1_at--834--6711Chr03:4190167..4190191 (25 bp)
GTTCTCCTACGAGGAAACTGTCCAG
LOC_Os03g08280
Os.3704.1.S1_at--477--3471Chr03:4190029..4190053 (25 bp)
CAGGAAGATTTCAAGGCCACCGAGA
LOC_Os03g08280
Os.3704.1.S1_at--56--10331Chr03:4189883..4189907 (25 bp)
TTTCAGAGCACTCACGACAGAGGAG
LOC_Os03g08280
Target Sequence 
AAGCACAAGTCTACACGCAGCATGCCTACATGAGGCCCCTTGGAGTAGTTGCTATGGTCTTGGGCTATGACGAAGAGAAA
AACGCTCAACTATTCAAATGTGACCCGGCAGGTCACTTCTTTGGACATAAGGCAACTAGCGCCGGTCTTAAGGAGCAGGA
AGCAATAAATTTTCTGGAGAAGAAAATGAAGGATGACCCACAGTTCTCCTACGAGGAAACTGTCCAGATTGCAATTTCTG
CATTGCAATCAGTTCTTCAGGAAGATTTCAAGGCCACCGAGATTGAGGTCGGTGTTGTGAGGAAAGATGATCGTGTTTTC
AGAGCACTCACGACAGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis