Browse Element(s) Details


Os.8088.1.S1_at

Description gb:AK070649.1
DB_XREF= gi:32980673
TID=Os.8088.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023062P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062P07, full insert sequence.
FL= gb:AK070649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0831011/11ZIM motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08270Os.11888.1.S1_s_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.3.S1_x_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.4.S1_at10/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270OsAffx.19395.1.S1_at1/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08280Os.3704.1.S1_at11/113+4189643..4192104Proteasome subunit alpha type 6, putative, expressed
LOC_Os03g08290Os.49494.2.A1_at11/113+4201200..4203097expressed protein
LOC_Os03g08300Os.49494.1.S1_at10/113+4202547..4207585glycosyl transferase, group 1 family protein, expressed
LOC_Os03g08310Os.8088.1.S1_at11/113+4211121..4212155ZIM motif family protein, expressed
LOC_Os03g08320Os.10356.1.S1_at11/113+4215841..4217214ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_s_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_at11/113+4228001..4229006ZIM motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8088.1.S1_at--360--8991Chr03:4211667..4211691 (25 bp)
TGAAGCGGTTCCTGGCGAAGCGCAA
LOC_Os03g08310
Os.8088.1.S1_at--722--8631Chr03:4211523..4211547 (25 bp)
TGGGAAGCCTTGGACACATGCACTC
LOC_Os03g08310
Os.8088.1.S1_at--877--5751Chr03:4211478..4211502 (25 bp)
GACGTCACGTCTGCGATTTGAGAAT
LOC_Os03g08310
Os.8088.1.S1_at--905--6591Chr03:4211440..4211464 (25 bp)
GATTGATCGCCATGTGGTCACCCGG
LOC_Os03g08310
Os.8088.1.S1_at--656--8191Chr03:4211387..4211411 (25 bp)
GGAAGATGGTTCTCGTCGCATTAAC
LOC_Os03g08310
Os.8088.1.S1_at--356--10771Chr03:4211358..4211382 (25 bp)
TTGAGTTGATTTCGCCGAGCCTGAC
LOC_Os03g08310
Os.8088.1.S1_at--790--5831Chr03:4211342..4211366 (25 bp)
GAGCCTGACCTTGAGTTGATTACCA
LOC_Os03g08310
Os.8088.1.S1_at--1157--6511Chr03:4211305..4211329 (25 bp)
GATTTCGTGATTAGCAGTTACCCTA
LOC_Os03g08310
Os.8088.1.S1_at--714--1211Chr03:4211290..4211314 (25 bp)
AGTTACCCTAGTTATCGCGGCGTAT
LOC_Os03g08310
Os.8088.1.S1_at--894--10491Chr03:4211263..4211287 (25 bp)
TTAAGCACGGTCACTGAAGCGCAAT
LOC_Os03g08310
Os.8088.1.S1_at--89--4591Chr03:4211245..4211269 (25 bp)
GCGCAATGGCCTTGAGTCGGTAGAT
LOC_Os03g08310
Target Sequence 
TGAAGCGGTTCCTGGCGAAGCGCAAGGCCACCCCCGCCTCCGCGCGGTCGTCGTACGTCGTCCGTGCTGCGGCGGCGGAG
GAGGAGCAGCNGCCGGCGAAGAAAGCGAAGGCGNCCGTGGAGAGGCGCGAGGATTGGCTCGCGCTGGGAAGCCTTGGACA
CATGCACTCGCGCTGATGATCATCGCCACGACGTCACGTCTGCGATTTGAGAATTGAGAGCTCGATCGATTGATCGCCAT
GTGGTCACCCGGTAGCCGATGCTGCAAGGCCGGTCGAGTTGGAAGATGGTTCTCGTCGCATTAACGGCCTTGAGTTGATT
TCGCCGAGCCTGACCTTGAGTTGATTACCATGGAAGTATGAAGATTTCGTGATTAGCAGTTACCCTAGTTATCGCGGCGT
ATAATTAAGCACGGTCACTGAAGCGCAATGGCCTTGAGTCGGTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis