Browse Element(s) Details


Os.9923.1.S1_at

Description gb:AK120087.1
DB_XREF= gi:37989710
TID=Os.9923.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020K01, full insert sequence.
FL= gb:AK120087.1 gb:AK067971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0833011/11ZIM motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08290Os.49494.2.A1_at11/113+4201200..4203097expressed protein
LOC_Os03g08300Os.49494.1.S1_at10/113+4202547..4207585glycosyl transferase, group 1 family protein, expressed
LOC_Os03g08310Os.8088.1.S1_at11/113+4211121..4212155ZIM motif family protein, expressed
LOC_Os03g08320Os.10356.1.S1_at11/113+4215841..4217214ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_s_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08350Os.49458.1.S1_at11/113+4240052..4241962membrane associated salt-inducible protein, putative, expressed
LOC_Os03g08360Os.4764.1.S1_at11/113+4246095..4250980fiddlehead, putative, expressed
LOC_Os03g08370Os.33256.1.S1_at11/113+4251989..4256585transposon protein, putative, unclassified, expressed
LOC_Os03g08370Os.33256.1.S2_at10/113+4251989..4256585transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9923.1.S1_at--496--10531Chr03:4228430..4228454 (25 bp)
TTCTACGGTGGGAGGATGGTCGTCT
LOC_Os03g08330
Os.9923.1.S1_at--8--6171Chr03:4228441..4228465 (25 bp)
GAGGATGGTCGTCTTCGAGGACTTC
LOC_Os03g08330
Os.9923.1.S1_at--1162--1371Chr03:4228453..4228477 (25 bp)
CTTCGAGGACTTCCCCGCGGACAAG
LOC_Os03g08330
Os.9923.1.S1_at--786--4131Chr03:4228545..4228569 (25 bp)
CGCTCGCGGACATGCCCATCATGAG
LOC_Os03g08330
Os.9923.1.S1_at--39--9051Chr03:4228581..4228605 (25 bp)
TGCAGCGGTTCTTCGCCAAGCGCAA
LOC_Os03g08330
Os.9923.1.S1_at--810--7891Chr03:4228587..4228611 (25 bp)
GGTTCTTCGCCAAGCGCAAGGACCG
LOC_Os03g08330
Os.9923.1.S1_at--816--5371Chr03:4228678..4228702 (25 bp)
GAAGAAGACGCCCACCTCATGGCTG
LOC_Os03g08330
Os.9923.1.S1_at--304--5371Chr03:4228681..4228705 (25 bp)
GAAGACGCCCACCTCATGGCTGGAC
LOC_Os03g08330
Os.9923.1.S1_at--1029--2371Chr03:4228782..4228806 (25 bp)
AAACGACTTAAGACGCGCGCGCGCT
LOC_Os03g08330
Os.9923.1.S1_at--1020--10291Chr03:4228965..4228989 (25 bp)
TTTCCTGTGCAAATTAAGCCAACTT
LOC_Os03g08330
Os.9923.1.S1_at--675--8971Chr03:4228972..4228996 (25 bp)
TGCAAATTAAGCCAACTTTTTAGTT
LOC_Os03g08330
Target Sequence 
TTCTACGGTGGGAGGATGGTCGTCTTCGAGGACTTCCCCGCGGACAAGGCGGCGGAGGTNATNCGCATNGCCTCCTCCGG
GATNGCGGCGGCGCCGGCTCANCGGGANGGCGCCGCGCTCGCGGACATGCCCATCATGAGGAAGGCGTCGCTGCAGCGGT
TCTTCGCCAAGCGCAAGGACCGCCTCGCGGCGACCACCCCCTACGCCCGCCCGTCGCCGGCGGAGACCAAGGCCTCCGAG
CCGGAGGAGAAGAAGACGCCCACCTCATGGCTGGACCTCGCCGCCTCCGCCTCCGCCGCCGCGCGCCGTGACAGCCTCAC
CATCGCGCTGTGATCTGCGCNGGCTTTNGACCNAAAAACGACTTAAGACGCGCGCGCGCTCTCAGCGCNGCAAGAGGATT
GATTCACTTTGCTCATACCCATGGCGACGTAGAGTTTTTACCGCTTTTGCTATACTTCTTTGTAAAATTCGATAGGGAGA
TTGAATTGATGGGAAACCCCTTGTGCCTGTTCTTTTTTGTCCCACTGTATCAAATATTCTTTCCTGTGCAAATTAAGCCA
ACTTTTTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis