Browse Element(s) Details


Os.9923.1.S1_s_at

Description gb:AK120087.1
DB_XREF= gi:37989710
TID=Os.9923.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123K19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020K01, full insert sequence.
FL= gb:AK120087.1 gb:AK067971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0833011/11ZIM motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08290Os.49494.2.A1_at11/113+4201200..4203097expressed protein
LOC_Os03g08300Os.49494.1.S1_at10/113+4202547..4207585glycosyl transferase, group 1 family protein, expressed
LOC_Os03g08310Os.8088.1.S1_at11/113+4211121..4212155ZIM motif family protein, expressed
LOC_Os03g08320Os.10356.1.S1_at11/113+4215841..4217214ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_s_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08350Os.49458.1.S1_at11/113+4240052..4241962membrane associated salt-inducible protein, putative, expressed
LOC_Os03g08360Os.4764.1.S1_at11/113+4246095..4250980fiddlehead, putative, expressed
LOC_Os03g08370Os.33256.1.S1_at11/113+4251989..4256585transposon protein, putative, unclassified, expressed
LOC_Os03g08370Os.33256.1.S2_at10/113+4251989..4256585transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9923.1.S1_s_at--967--6151Chr03:4228819..4228843 (25 bp)
GAGGATTGATTCACTTTGCTCATAC
LOC_Os03g08330
Os.9923.1.S1_s_at--431--6591Chr03:4228822..4228846 (25 bp)
GATTGATTCACTTTGCTCATACCCA
LOC_Os03g08330
Os.9923.1.S1_s_at--65--8831Chr03:4228825..4228849 (25 bp)
TGATTCACTTTGCTCATACCCATGG
LOC_Os03g08330
Os.9923.1.S1_s_at--93--10291Chr03:4228833..4228857 (25 bp)
TTTGCTCATACCCATGGCGACGTAG
LOC_Os03g08330
Os.9923.1.S1_s_at--942--3531Chr03:4228839..4228863 (25 bp)
CATACCCATGGCGACGTAGAGTTTT
LOC_Os03g08330
Os.9923.1.S1_s_at--402--4331Chr03:4228844..4228868 (25 bp)
CCATGGCGACGTAGAGTTTTTACCG
LOC_Os03g08330
Os.9923.1.S1_s_at--393--4871Chr03:4228874..4228898 (25 bp)
GCTATACTTCTTTGTAAAATTCGAT
LOC_Os03g08330
Os.9923.1.S1_s_at--894--3611Chr03:4228925..4228949 (25 bp)
CTTGTGCCTGTTCTTTTTTGTCCCA
LOC_Os03g08330
Os.9923.1.S1_s_at--1049--6711Chr03:4228934..4228958 (25 bp)
GTTCTTTTTTGTCCCACTGTATCAA
LOC_Os03g08330
Os.9923.1.S1_s_at--71--8711Chr03:4228943..4228967 (25 bp)
TGTCCCACTGTATCAAATATTCTTT
LOC_Os03g08330
Os.9923.1.S1_s_at--748--6891Chr03:4228952..4228976 (25 bp)
GTATCAAATATTCTTTCCTGTGCAA
LOC_Os03g08330
Target Sequence 
GAGGATTGATTCACTTTGCTCATACCCATGGCGACGTAGAGTTTTTACCGCTTTTGCTATACTTCTTTGTAAAATTCGAT
AGGGAGATTGAATTGATGGGAAACCCCTTGTGCCTGTTCTTTTTTGTCCCACTGTATCAAATATTCTTTCCTGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9923.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis