Browse Element(s) Details


Os.49494.1.S1_at

Description gb:AK069776.1
DB_XREF= gi:32979800
TID=Os.49494.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49494 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029I02, full insert sequence.
FL= gb:AK069776.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0830010/11glycosyl transferase, group 1 family protein, expressed
LOC_Os06g368901/11Glycosyl transferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08250Os.14248.1.S1_at10/113+4178926..4179852expressed protein
LOC_Os03g08260OsAffx.25018.1.S1_at10/113+4181709..4182443hypothetical protein
LOC_Os03g08270Os.11888.1.S1_s_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.3.S1_x_at11/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270Os.11888.4.S1_at10/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08270OsAffx.19395.1.S1_at1/113+4182618..4189420Ataxin-2 C-terminal region family protein, expressed
LOC_Os03g08280Os.3704.1.S1_at11/113+4189643..4192104Proteasome subunit alpha type 6, putative, expressed
LOC_Os03g08290Os.49494.2.A1_at11/113+4201200..4203097expressed protein
LOC_Os03g08300Os.49494.1.S1_at10/113+4202547..4207585glycosyl transferase, group 1 family protein, expressed
LOC_Os03g08310Os.8088.1.S1_at11/113+4211121..4212155ZIM motif family protein, expressed
LOC_Os03g08320Os.10356.1.S1_at11/113+4215841..4217214ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_s_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_at11/113+4228001..4229006ZIM motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49494.1.S1_at--182--2972Chr06:21734304..21734328 (25 bp)
AATGGGAACGTTATGCACTCCCCTT
LOC_Os06g36890
Os.49494.1.S1_at--1120--1951Chr03:4203266..4203287 (22 bp)
ACTCCCCTTGGTGAACCAGGTCATA
LOC_Os03g08300
Os.49494.1.S1_at--954--9592Chr06:21733791..21733815 (25 bp)
TCATTCCAGAGATTATAGGCGCACT
NONE
Os.49494.1.S1_at--804--8391Chr03:4202988..4203012 (25 bp)
GGCGCACTGTGCACTTGAGTGAGCA
LOC_Os03g08300
Os.49494.1.S1_at--198--10252Chr06:21733701..21733725 (25 bp)
TTTGTTTGCTTACACCAAGGCAGGA
NONE
Os.49494.1.S1_at--689--1751Chr03:4202853..4202877 (25 bp)
ACCTGACTCGAATCTCCTTTGATAT
LOC_Os03g08300
Os.49494.1.S1_at--726--2431Chr03:4202730..4202754 (25 bp)
AAAAGAAACGCTAGTCTCCTCTCTC
LOC_Os03g08300
Os.49494.1.S1_at--654--3172Chr06:21733535..21733559 (25 bp)
AATTGTTCTTGTTGCCTCTTTACTG
NONE
Os.49494.1.S1_at--717--7711Chr03:4202649..4202673 (25 bp)
GGGTGTCTATATCTCCAGATCCAAC
LOC_Os03g08300
Os.49494.1.S1_at--925--6772Chr06:21733437..21733461 (25 bp)
GTTAGCCTGCAAGAACCGCTACAAT
NONE
Os.49494.1.S1_at--937--9891Chr03:4202547..4202571 (25 bp)
TACTATTCTCATTTTCTGTCAGACG
NONE
Target Sequence 
AATGGGAACGTTATGCACTCCCCTTGGTGAACCAGGTCATAGGTTGAAATGCATGATAACATTCGACAGGTAGNCAAATC
ATGTATTTGTTACAGCTTGCTTGAACATCTGTTCATTCCAGAGATTATAGGCGCACTGTGCACTTGAGTGAGCATATGGC
ATATGTACATTTGAAGGTTGGGGAGAGACCATATCATATTTTTGTTTGCTTACACCAAGGCAGGANGTANGACAACTAGA
ACTGACCCTTTAGTTTGATATAGGACCTGACTCGAATCTCCTTTGATATTTTATTTGGTAAGCAAAAGGGAAACCCTTTT
TTGTAATAGAAGTTGACAACACGTTTTGTAAACAGACATGTACATGTACTGAAGTACGGTCGTACAAAAAAGAAACGCTA
GTCTCCTCTCTCAANAAAAGAAAAAAAAATCCAGGAAATTGTTCTTGTTGCCTCTTTACTGCCACCGGGGGTGTCTATAT
CTCCAGATCCAACACAATGTCTGGGGAATGAATTCAAGGATGTAAAACATCAGATTCTATATATGTTAGCCTGCAAGAAC
CGCTACAATATACTATTCTCATTTTCTGTCAGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis