Browse Element(s) Details


Os.10356.1.S1_at

Description gb:AK073589.1
DB_XREF= gi:32983612
TID=Os.10356.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051K03, full insert sequence.
FL= gb:AK073589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0832011/11ZIM motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08280Os.3704.1.S1_at11/113+4189643..4192104Proteasome subunit alpha type 6, putative, expressed
LOC_Os03g08290Os.49494.2.A1_at11/113+4201200..4203097expressed protein
LOC_Os03g08300Os.49494.1.S1_at10/113+4202547..4207585glycosyl transferase, group 1 family protein, expressed
LOC_Os03g08310Os.8088.1.S1_at11/113+4211121..4212155ZIM motif family protein, expressed
LOC_Os03g08320Os.10356.1.S1_at11/113+4215841..4217214ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_s_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08350Os.49458.1.S1_at11/113+4240052..4241962membrane associated salt-inducible protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10356.1.S1_at--319--8711Chr03:4216637..4216661 (25 bp)
TGTCGCTGCAGAGGTTCCTGGAGAA
LOC_Os03g08320
Os.10356.1.S1_at--2--2011Chr03:4216780..4216804 (25 bp)
ACTCTCAGCCTGTGAGCCGAAGAAA
LOC_Os03g08320
Os.10356.1.S1_at--692--1731Chr03:4216869..4216893 (25 bp)
ACCATTTGATTTCCACGTGTCTGTG
LOC_Os03g08320
Os.10356.1.S1_at--621--1071Chr03:4216897..4216921 (25 bp)
AGTGTGGAACCGTGTATTATTGATC
LOC_Os03g08320
Os.10356.1.S1_at--91--10411Chr03:4216913..4216937 (25 bp)
TTATTGATCGTTTTTCCCCATTTCT
LOC_Os03g08320
Os.10356.1.S1_at--939--10291Chr03:4216925..4216949 (25 bp)
TTTCCCCATTTCTTACTATTTTGCA
LOC_Os03g08320
Os.10356.1.S1_at--572--7111Chr03:4217016..4217040 (25 bp)
GTCAGCTTATCTGTTTGTTTGAGAA
LOC_Os03g08320
Os.10356.1.S1_at--715--2731Chr03:4217056..4217080 (25 bp)
AAGAATTCTTTCATGCATGCTGATC
LOC_Os03g08320
Os.10356.1.S1_at--265--10191Chr03:4217082..4217106 (25 bp)
TATATGTAAGGATCCATGCACACGG
LOC_Os03g08320
Os.10356.1.S1_at--112--5131Chr03:4217099..4217123 (25 bp)
GCACACGGATTGATGCCTGTCGGAC
LOC_Os03g08320
Os.10356.1.S1_at--403--4251Chr03:4217114..4217138 (25 bp)
CCTGTCGGACCTATGGCTTGTAAAT
LOC_Os03g08320
Target Sequence 
TGTCGCTGCAGAGGTTCCTGGAGAAGAGGAAGAACAGGATCGTCGTGGCGGAGCCACTGCCGGAGTCGGAGAAGAAGGAG
GCGGAGTCGAGCAAGCNGTGCCAAGAAAGACGATGGCGGCGCGTCGTGGCTCCAGGTGAACCCCACTCTCAGCCTGTGAG
CCGAAGAAACTGAAGATAGCTGGATCAAACAAGGAAAAATTAATTACTACTACTAGTAGTACTGTATTGATTTACCATTT
GATTTCCACGTGTCTGTGGAAAGTGTGGAACCGTGTATTATTGATCGTTTTTCCCCATTTCTTACTATTTTGCAACAGTT
GTTGGNTTNCTTCCGGGGGAATTAGTAGCTAGGTAGCAGCTATGATTGGTTAAATTAATNTGTCAGCTTATCTGTTTGTT
TGAGAATTCTTTGATTATTTGAAGAATTCTTTCATGCATGCTGATCTTATATGTAAGGATCCATGCACACGGATTGATGC
CTGTCGGACCTATGGCTTGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis