Browse Element(s) Details


Os.33256.1.S2_at

Description gb:AK067807.1
DB_XREF= gi:32977825
TID=Os.33256.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33256 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120L22, full insert sequence.
FL= gb:AK067807.1 gb:AK101197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0837010/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08330Os.9923.1.S1_s_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08350Os.49458.1.S1_at11/113+4240052..4241962membrane associated salt-inducible protein, putative, expressed
LOC_Os03g08360Os.4764.1.S1_at11/113+4246095..4250980fiddlehead, putative, expressed
LOC_Os03g08370Os.33256.1.S1_at11/113+4251989..4256585transposon protein, putative, unclassified, expressed
LOC_Os03g08370Os.33256.1.S2_at10/113+4251989..4256585transposon protein, putative, unclassified, expressed
LOC_Os03g08380OsAffx.25019.1.S1_at11/113+4258579..4264002ABC transporter family protein, expressed
LOC_Os03g08390Os.15574.1.S1_at11/113+4266471..4270919expressed protein
LOC_Os03g08390OsAffx.23909.1.S1_at1/113+4266471..4270919expressed protein
LOC_Os03g08400OsAffx.31174.3.S1_x_at11/113+4272257..4276574hypothetical protein
LOC_Os03g08400OsAffx.31174.1.S1_at10/113+4272257..4276574hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33256.1.S2_at--872--2591Chr03:4255419..4255528 (25 bp)
AACGAGCTTAACCATGACACTTCTG
LOC_Os03g08370
Os.33256.1.S2_at--737--671NONE
ATGACACTTCTGTTTCTAACTCCCA
NONE
Os.33256.1.S2_at--66--2851Chr03:4256094..4256114 (21 bp)
AAGTCAGGGTTATGCTCCCTTAGCA
LOC_Os03g08370
Os.33256.1.S2_at--644--4311Chr03:4256107..4256131 (25 bp)
CCTTAGCAGGGATTCAGCAGCAGCA
LOC_Os03g08370
Os.33256.1.S2_at--634--8151Chr03:4256139..4256163 (25 bp)
GGAAATTTTCGCCTGAACCATGAAA
LOC_Os03g08370
Os.33256.1.S2_at--468--2131Chr03:4256181..4256205 (25 bp)
ACAGAACTGGCGCTTTTGCCCTGTT
LOC_Os03g08370
Os.33256.1.S2_at--923--512Chr06:24429259..24429278 (20 bp)
ATCGAAACAGTCTCTAGTCTCTACC
NONE
Os.33256.1.S2_at--1082--5251Chr03:4256369..4256393 (25 bp)
GAGTTTAAACGCTGTTGGACCTTGG
LOC_Os03g08370
Os.33256.1.S2_at--252--8511Chr03:4256384..4256408 (25 bp)
TGGACCTTGGAGGAAGTACCCGCTA
LOC_Os03g08370
Os.33256.1.S2_at--695--3171Chr03:4256516..4256540 (25 bp)
CAATTGCTTCGCTGCCAAATGGCCA
LOC_Os03g08370
Os.33256.1.S2_at--993--2031Chr03:4256540..4256564 (25 bp)
ACTTCAACCATGCACTCTTTTAATC
LOC_Os03g08370
Target Sequence 
AACGAGCTTAACCATGACACTTCTGTTTCTAACTCCCACCAGCAGGCCCTTCATGGAGGTGCACAGGGAAGTCAGGGTTA
TGCTCCCTTAGCAGGGATTCAGCAGCAGCAGTTTATTGGAAATTTTCGCCTGAACCATGAAACAGGTTTCTTATGAAAAA
CAGAACTGGCGCTTTTGCCCTGTTCTTGTCTTCCAAAAACTTTTTTGCTCTGTTATTCCAAAGACAATGACACAAGACAT
CGAAACAGTCTCTAGTCTCTACCTTTACATCTCCCTTGTAAATTCTAATTCATATTTCGTAGCATCACAAATATACAAGC
TCAATAGTTTTCAGGAAACTACGTTCAGAGTTTAAACGCTGTTGGACCTTGGAGGAAGTACCCGCTAAGACATAAGTCTG
ATTATTGGCCTAAAATAAGGTTGTATTATTAGCATATGTGATGTAGTATATACAGACATACAGTTCGTAGTTCTGGTGAT
TTTGCAGAAGCTTTCAATTGCTTCGCTGCCAAATGGCCACTTCAACCATGCACTCTTTTAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33256.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis