Browse Element(s) Details


OsAffx.23909.1.S1_at

Description tigr:9629.m06340
TID=OsAffx.23909.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=basic leucine zipper protein - maize
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6402011/11Transcription factor HBP-1b, putative, expressed
LOC_Os03g083901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63990Os.6375.2.S1_x_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g63990Os.6375.1.S1_s_at11/111+37481297..37484299hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g64000Os.10541.1.S1_at11/111+37501402..37503251ABA response element binding factor, putative, expressed
LOC_Os01g64010Os.5366.1.S2_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.2.S1_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.1.S1_a_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64010Os.5366.3.S1_x_at11/111+37504302..37511595Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g64020Os.42388.1.S1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.42388.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020OsAffx.23909.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.52227.1.S1_at1/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64030Os.26365.1.S1_at11/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64030Os.19541.1.S1_at1/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64030Os.5606.1.S1_at1/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64040NANA1+37525182..37525692expressed protein
LOC_Os01g64050NANA1+37528099..37531259hypothetical protein
LOC_Os01g64060NANA1+37531704..37532972retrotransposon protein, putative, unclassified
LOC_Os01g64070Os.46862.1.S1_at10/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.22385.1.S1_x_at5/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.20329.1.S1_at2/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23909.1.S1_at--1074--8031Chr01:37510559..37510583 (25 bp)
GGAGTACTGAAGTTCCTATTACATA
LOC_Os01g64020
OsAffx.23909.1.S1_at--414--8991Chr01:37510534..37510558 (25 bp)
TGAAGCCTATTGCAAAGCCTGAAAA
LOC_Os01g64020
OsAffx.23909.1.S1_at--390--2552Chr06:8253053..8253088 (24 bp)
AACTGCTACTGTTTGATCATCATCG
NONE
OsAffx.23909.1.S1_at--651--631Chr01:37510427..37510451 (25 bp)
ATGCTACAATTGTCCTTCTCTGTCA
LOC_Os01g64020
OsAffx.23909.1.S1_at--482--8731Chr01:37510407..37510431 (25 bp)
TGTCAGATGCGCAGCAATGCTCGCT
LOC_Os01g64020
OsAffx.23909.1.S1_at--982--3011Chr01:37510392..37510416 (25 bp)
AATGCTCGCTAGCTGTTGGCCATGG
LOC_Os01g64020
OsAffx.23909.1.S1_at--938--8452Chr03:4267423..4267488 (24 bp)
TGGCCATGGCCCTACAAAGCTTTGT
LOC_Os03g08390
OsAffx.23909.1.S1_at--931--5651Chr01:37510337..37510361 (25 bp)
GACAGGCCAACTTTTGTCAGAAAGA
LOC_Os01g64020
OsAffx.23909.1.S1_at--1086--5491Chr01:37510225..37510249 (25 bp)
GAACAAGCTAACGATACCGGATTAC
LOC_Os01g64020
OsAffx.23909.1.S1_at--770--7031Chr01:37510124..37510148 (25 bp)
GTACACTTGTACTGGCATTACATAC
LOC_Os01g64020
OsAffx.23909.1.S1_at--1067--611Chr01:37510089..37510113 (25 bp)
ATGTACAAACCTGTCTCTTTCTTTA
LOC_Os01g64020
Target Sequence 
GGAGTACTGAAGTTCCTATTACATATGAAGCCTATTGCAAAGCCTGAAAAAATAAACTGCTACTGTTTGATCATCATCGA
GTAAATCTTTTTACCGAGAGCAACCAAACAAACGATGCATGAAAGAAAAACTATGCTACAATTGTCCTTCTCTGTCAGAT
GCGCAGCAATGCTCGCTAGCTGTTGGCCATGGCCCTACAAAGCTTTGTCCAACCTTCTCCCTGACAGGCCAACTTTTGTC
AGAAAGAAGTACTATACTACTACTCCAGCTTAACACTTTCAGATAAGCATCATTAGCACTTTCCAGCATGCATAATTACC
TTGTTATTAACTGAGAACAAGCTAACGATACCGGATTACTGGTACTACCAATTATTGGATGCTTTTCAAAAAGGAGTTGT
TGGTAGGGGCCAAGCCATAGGAGGCAAAGGTTGTTGTACACTTGTACTGGCATTACATACAGTACTCTACATGTACAAAC
CTGTCTCTTTCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis