Browse Element(s) Details


Os.5606.1.S1_at

Description gb:AK107291.1
DB_XREF= gi:32992500
TID=Os.5606.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative betanidin 6-O-glucosyltransferase (OJ1112_E08.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B11, full insert sequence.
FL= gb:AK107291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3769011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g363001/11F-box domain containing protein, expressed
LOC_Os01g640301/11F-box family protein, putative, expressed
LOC_Os06g181401/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37650Os.11759.1.S1_at11/117+22570439..22576212GTPase activating protein, putative, expressed
LOC_Os07g37660OsAffx.22485.1.S1_x_at11/117+22578377..22578792hypothetical protein
LOC_Os07g37670NANA7+22581259..22586123retrotransposon protein, putative, unclassified
LOC_Os07g37680Os.34868.1.S1_at11/117+22589212..22592946expressed protein
LOC_Os07g37680Os.14275.1.S1_at8/117+22589212..22592946expressed protein
LOC_Os07g37680OsAffx.14754.1.S1_at2/117+22589212..22592946expressed protein
LOC_Os07g37690Os.5606.1.S1_at11/117+22595962..22597649UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g37700Os.34120.1.S1_at3/117+22600371..22600601hypothetical protein
LOC_Os07g37710Os.48016.1.S1_at6/117+22606199..22606950hypothetical protein
LOC_Os07g37720Os.48016.1.S1_at7/117+22608407..22614233hypothetical protein
LOC_Os07g37730Os.44475.1.S1_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730Os.44475.1.S1_x_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730OsAffx.22555.1.S1_x_at3/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0009808biological_processlignin metabolism
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
GO:0047209molecular_functionconiferyl-alcohol glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5606.1.S1_at--726--4611Chr07:22597170..22597194 (25 bp)
GCGAGCAGCACCTCAACGCGTTCGA
LOC_Os07g37690
Os.5606.1.S1_at--904--9712Chr07:22597182..22597206 (25 bp)
TCAACGCGTTCGAGGCCGTGGCCTC
LOC_Os07g37690
Os.5606.1.S1_at--427--9411Chr07:22597425..22597449 (25 bp)
TCGTGCGTGAGATCGTTCGTGTCGT
LOC_Os07g37690
Os.5606.1.S1_at--195--2011Chr07:22597460..22597484 (25 bp)
ACTAGGCCGGAATAGCTGGCTGGTT
LOC_Os07g37690
Os.5606.1.S1_at--114--251Chr07:22597539..22597563 (25 bp)
ATACTAGAAACCAAGACGTCAACCA
LOC_Os07g37690
Os.5606.1.S1_at--999--1891Chr07:22597554..22597578 (25 bp)
ACGTCAACCACGTGATGCGGCTTAA
LOC_Os07g37690
Os.5606.1.S1_at--960--3231Chr07:22597558..22597582 (25 bp)
CAACCACGTGATGCGGCTTAAGGGT
LOC_Os07g37690
Os.5606.1.S1_at--778--10491Chr07:22597575..22597599 (25 bp)
TTAAGGGTGTGTTTGATTCGTGGTA
LOC_Os07g37690
Os.5606.1.S1_at--285--111Chr07:22597590..22597614 (25 bp)
ATTCGTGGTAGGGTATAGCCATCCC
LOC_Os07g37690
Os.5606.1.S1_at--678--8711Chr07:22597598..22597622 (25 bp)
TAGGGTATAGCCATCCCTACCCCTA
LOC_Os07g37690
Os.5606.1.S1_at--649--37136Chr12:26293768..26293813 (25 bp)
CTACCCCTATGAGCAAATCCTGGAG
NONE
Target Sequence 
GCGAGCAGCACCTCAACGCGTTCGAGGCCGTGGCCTCCATGGGCGTCGCGGTCGAGCTGAGGAGGACGACGGCGAAGGAC
GGCGACGCGGCGAGATCGCTCGTGGAGGCGGCGGAGGTGGAGCGCGCGGTGAGGAGGCTGATGGCGCCGCAGGGCGGCGG
GTCGTCGGAGGCGAGGGAGAAGGCCGCGGAGGTGAGCGCGGCGTGCAGGAAGGCCGTGGAGGAGGGCGGGTCGTCGCACG
CGGCGCTGCAACGGCTCGTGCGTGAGATCGTTCGTGTCGTGGCAGGCCNCACTAGGCCGGAATAGCTGGCTGGTTGCGGT
TGGTTGGCCCATNTCACACGGTACTCGGCCCAGTNTAGACGAGAAAATTATACTAGAAACCAAGACGTCAACCACGTGAT
GCGGCTTAAGGGTGTGTTTGATTCGTGGTAGGGTATAGCCATCCCTACCCCTATGAGCAAATCCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis