Browse Element(s) Details


OsAffx.22555.1.S1_x_at

Description gb:NM_185831.1
DB_XREF= gi:34898747
GEN=OJ1720_F04.22
TID=OsAffx.22555.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM (OJ1720_F04.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g377303/11Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37680Os.34868.1.S1_at11/117+22589212..22592946expressed protein
LOC_Os07g37680Os.14275.1.S1_at8/117+22589212..22592946expressed protein
LOC_Os07g37680OsAffx.14754.1.S1_at2/117+22589212..22592946expressed protein
LOC_Os07g37690Os.5606.1.S1_at11/117+22595962..22597649UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g37700Os.34120.1.S1_at3/117+22600371..22600601hypothetical protein
LOC_Os07g37710Os.48016.1.S1_at6/117+22606199..22606950hypothetical protein
LOC_Os07g37720Os.48016.1.S1_at7/117+22608407..22614233hypothetical protein
LOC_Os07g37730Os.44475.1.S1_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730Os.44475.1.S1_x_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730OsAffx.22555.1.S1_x_at3/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37740Os.17886.1.S1_at9/117+22626002..22630563Secretory carrier-associated membrane protein, putative, expressed
LOC_Os07g37750Os.38103.1.S1_at11/117+22633066..22643973guanine nucleotide exchange family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0015036molecular_functiondisulfide oxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22555.1.S1_x_at--95--4551Chr07:22608353..22608377 (25 bp)
GCCCAGGTGATGCTCCGACCAACAA
NONE
OsAffx.22555.1.S1_x_at--799--7751Chr07:22608348..22608372 (25 bp)
GGTGATGCTCCGACCAACAACGGCG
NONE
OsAffx.22555.1.S1_x_at--826--5831Chr07:22608315..22608339 (25 bp)
GACCTCCGAGAGACCACCAGACGTT
NONE
OsAffx.22555.1.S1_x_at--395--9291Chr07:22608311..22608335 (25 bp)
TCCGAGAGACCACCAGACGTTGGAT
NONE
OsAffx.22555.1.S1_x_at--1156--1371Chr07:22608305..22608329 (25 bp)
AGACCACCAGACGTTGGATTGGGAA
NONE
OsAffx.22555.1.S1_x_at--109--3391Chr07:22608298..22608322 (25 bp)
CAGACGTTGGATTGGGAAGAAGCTA
NONE
OsAffx.22555.1.S1_x_at--507--5391Chr07:22608280..22608304 (25 bp)
GAAGCTAAAGCCAATGGGCGTGTCT
NONE
OsAffx.22555.1.S1_x_at--438--2651Chr07:22608273..22608297 (25 bp)
AAGCCAATGGGCGTGTCTGGGCCGA
NONE
OsAffx.22555.1.S1_x_at--593--952Chr07:22619320..22619344 (25 bp)
AGGAACAGGTTCTACGTGGCGGTCA
LOC_Os07g37730
OsAffx.22555.1.S1_x_at--1002--3472Chr07:22619325..22619349 (25 bp)
CAGGTTCTACGTGGCGGTCAACTGG
LOC_Os07g37730
OsAffx.22555.1.S1_x_at--915--7812Chr07:22619340..22619364 (25 bp)
GGTCAACTGGGCCACCACGCTCGTG
LOC_Os07g37730
Target Sequence 
GCCCAGGTGATGCTCCGACCAACAACGGCGACGACGCAGACCTCCGAGAGACCACCAGACGTTGGATTGGGAAGAAGCTA
AAGCCAATGGGCGTGTCTGGGCCGAGGGTGGTGAGCTGGAGGAACAGGTTCTACGTGGCGGTCAACTGGGCCACCACGCT
CGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22555.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis