Browse Element(s) Details


Os.44475.1.S1_x_at

Description gb:AK121213.1
DB_XREF= gi:37990836
TID=Os.44475.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.44475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NADH dehydrogenase (OJ1112_E08.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089K20, full insert sequence.
FL= gb:AK121213.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3773011/11Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37680Os.34868.1.S1_at11/117+22589212..22592946expressed protein
LOC_Os07g37680Os.14275.1.S1_at8/117+22589212..22592946expressed protein
LOC_Os07g37680OsAffx.14754.1.S1_at2/117+22589212..22592946expressed protein
LOC_Os07g37690Os.5606.1.S1_at11/117+22595962..22597649UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os07g37700Os.34120.1.S1_at3/117+22600371..22600601hypothetical protein
LOC_Os07g37710Os.48016.1.S1_at6/117+22606199..22606950hypothetical protein
LOC_Os07g37720Os.48016.1.S1_at7/117+22608407..22614233hypothetical protein
LOC_Os07g37730Os.44475.1.S1_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730Os.44475.1.S1_x_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730OsAffx.22555.1.S1_x_at3/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37740Os.17886.1.S1_at9/117+22626002..22630563Secretory carrier-associated membrane protein, putative, expressed
LOC_Os07g37750Os.38103.1.S1_at11/117+22633066..22643973guanine nucleotide exchange family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0015036molecular_functiondisulfide oxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44475.1.S1_x_at--469--10611Chr07:22619164..22619188 (25 bp)
TTCGTGTACAAGCACATCGGGAGCA
LOC_Os07g37730
Os.44475.1.S1_x_at--377--3231Chr07:22619172..22619196 (25 bp)
CAAGCACATCGGGAGCATGGCGTCG
LOC_Os07g37730
Os.44475.1.S1_x_at--743--871Chr07:22619257..22619281 (25 bp)
ATGGCCGGGTTCGTCAGCTGGCTCA
LOC_Os07g37730
Os.44475.1.S1_x_at--51--3751Chr07:22619278..22619302 (25 bp)
CTCATGTGGCGGTCGGCGTACCTGA
LOC_Os07g37730
Os.44475.1.S1_x_at--1103--5472Chr07:22619322..22619346 (25 bp)
GAACAGGTTCTACGTGGCGGTCAAC
LOC_Os07g37730
Os.44475.1.S1_x_at--419--3351Chr07:22619355..22619379 (25 bp)
CACGCTCGTGTTCGGCAGGGACAAC
LOC_Os07g37730
Os.44475.1.S1_x_at--111--5631Chr07:22619374..22619398 (25 bp)
GACAACACCAGGATCGGCTGAATTT
LOC_Os07g37730
Os.44475.1.S1_x_at--278--10391Chr07:22619399..22619423 (25 bp)
TTTTGTCGGGATTTGGCTGGAACGT
LOC_Os07g37730
Os.44475.1.S1_x_at--845--4712Chr07:22619414..22619438 (25 bp)
GCTGGAACGTGTGTTCAGTTCTCTG
LOC_Os07g37730
Os.44475.1.S1_x_at--197--3451Chr07:22619429..22619453 (25 bp)
CAGTTCTCTGAATAATCCACACGTT
LOC_Os07g37730
Os.44475.1.S1_x_at--54--9771Chr07:22619441..22619465 (25 bp)
TAATCCACACGTTCTGGAAGAGAGG
LOC_Os07g37730
Target Sequence 
TTCGTGTACAAGCACATCGGGAGCATGGCGTCGGTGGGGAGGTACAAGGCGCTGGTGGACCTGAGGGAGAACAAGGACGC
CAGGGGGGTGTCCATGGCCGGGTTCGTCAGCTGGCTCATGTGGCGGTCGGCGTACCTGACGAGGGTGGTGAGCTGGAGGA
ACAGGTTCTACGTGGCGGTCAACTGGGCCACCACGCTCGTGTTCGGCAGGGACAACACCAGGATCGGCTGAATTTTTTTG
TCGGGATTTGGCTGGAACGTGTGTTCAGTTCTCTGAATAATCCACACGTTCTGGAAGAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44475.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis