Browse Element(s) Details


Os.17886.1.S1_at

Description gb:AK102110.1
DB_XREF= gi:32987319
TID=Os.17886.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative secretory carrier membrane protein (OJ1112_E08.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084E14, full insert sequence.
FL= gb:AK102110.1 gb:AK061125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g377409/11Secretory carrier-associated membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37710Os.48016.1.S1_at6/117+22606199..22606950hypothetical protein
LOC_Os07g37720Os.48016.1.S1_at7/117+22608407..22614233hypothetical protein
LOC_Os07g37730Os.44475.1.S1_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730Os.44475.1.S1_x_at11/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37730OsAffx.22555.1.S1_x_at3/117+22617392..22619555Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os07g37740Os.17886.1.S1_at9/117+22626002..22630563Secretory carrier-associated membrane protein, putative, expressed
LOC_Os07g37750Os.38103.1.S1_at11/117+22633066..22643973guanine nucleotide exchange family protein, putative, expressed
LOC_Os07g37760Os.53924.1.S1_at11/117+22646672..22652656lysine ketoglutarate reductase trans-splicing related 1, putative, expressed
LOC_Os07g37770Os.12042.1.S1_at8/117+22652964..2265489440S ribosomal protein S11, putative, expressed
LOC_Os07g37780Os.12042.1.S1_at9/117+22655551..2265748040S ribosomal protein S11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045045biological_processsecretory pathway
GO:0005739cellular_componentmitochondrion
GO:0005386molecular_functioncarrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17886.1.S1_at--345--8571Chr07:22626668..22626692 (25 bp)
TGGATTTGGATTGTTCTGCGTCGAA
LOC_Os07g37740
Os.17886.1.S1_at--1102--10591Chr07:22626655..22626679 (25 bp)
TTCTGCGTCGAATCATTGCTCAGCA
LOC_Os07g37740
Os.17886.1.S1_at--581--71Chr07:22626641..22626665 (25 bp)
ATTGCTCAGCATCTGGGTTATCCAG
LOC_Os07g37740
Os.17886.1.S1_at--167--7891NONE
GGTTATCCAGCAAGTGTACATGTAC
NONE
Os.17886.1.S1_at--770--611Chr07:22626350..22626374 (25 bp)
ATGCGGGCAGCTTTTTAATTATCAG
LOC_Os07g37740
Os.17886.1.S1_at--520--10231Chr07:22626318..22626342 (25 bp)
TATTGGTCCGACTCATATCTCTGAT
LOC_Os07g37740
Os.17886.1.S1_at--17--271Chr07:22626262..22626286 (25 bp)
ATATGTTTTCCCTGTTTGCTGACTA
LOC_Os07g37740
Os.17886.1.S1_at--717--1111Chr07:22626212..22626236 (25 bp)
AGTGACGTTGTATGACCTGTCCTCT
LOC_Os07g37740
Os.17886.1.S1_at--499--2111Chr07:22626148..22626172 (25 bp)
ACAGGCTTTACAGCTGGTGTTACTA
LOC_Os07g37740
Os.17886.1.S1_at--271--4651Chr07:22626123..22626147 (25 bp)
GCGTAGAACATTTTCGTTTTCGTCT
LOC_Os07g37740
Os.17886.1.S1_at--612--3011Chr07:22626002..22626026 (25 bp)
AATGCTATTTGTTGGTGACTCGTCC
NONE
Target Sequence 
TGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGCAAGTGTACATGTACTTCCGAGGAAGTG
GAAAAGCTGCTGAGATGAAGCGTGATGCAACTAGGGGTGCTATGCGGGCAGCTTTTTAATTATCAGAAAAGATTATTGGT
CCGACTCATATCTCTGATGGAATGGATAGATTGTGGTATAAACGAACATATATGTTTTCCCTGTTTGCTGACTACAATTT
CAAATTGTTAGTAGGTTACAGTGACGTTGTATGACCTGTCCTCTTGATNTCATCAATATAGAGAATGTGCAGNTNNTTAC
TTGTTACAGGCTTTACAGCTGGTGTTACTAGCGTAGAACATTTTCGTTTTCGTCTGGGCTAAAAAAGTATAAATCGACAC
CAATGAATGATTCAGCCCATGAAAGAATTCTCTTTGTTATATGTACAGGAAACAAATCAGATAGGCAATCAAATGCTATT
TGTTGGTGACTCGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis